tpcclib-doc/v1/libtpcimgio_8h_source.html

#ifndef _LIBTPCIMGIO_H

#define _LIBTPCIMGIO_H

/*****************************************************************************/


/*****************************************************************************/

#include "tpcclibConfig.h"

/*****************************************************************************/

//#include <omp.h>

/*****************************************************************************/

#include <stdio.h>

#include <string.h>

#include <math.h>

#include <stdint.h>

#include <stdlib.h>

#include <strings.h>

#include <ctype.h>

#include <float.h>

#include <unistd.h>

#include <locale.h>

#include <time.h>

/*****************************************************************************/

#include "libtpcmisc.h"

/*****************************************************************************/


/*****************************************************************************/

#ifndef BACKUP_EXTENSION

#define BACKUP_EXTENSION ".bak"

#endif

/*****************************************************************************/


/*****************************************************************************/

/* Analyze */


#define ANALYZE_HEADER_KEY_SIZE 40

#define ANALYZE_HEADER_IMGDIM_SIZE 108

#define ANALYZE_HEADER_HISTORY_SIZE 200

#define ANALYZE_FLIP_DEFAULT 1


#define ANALYZE_DT_NONE 0

#define ANALYZE_DT_UNKNOWN 0

#define ANALYZE_DT_BINARY 1

#define ANALYZE_DT_UNSIGNED_CHAR 2

#define ANALYZE_DT_SIGNED_SHORT 4

#define ANALYZE_DT_SIGNED_INT 8

#define ANALYZE_DT_FLOAT 16

#define ANALYZE_DT_COMPLEX 32

#define ANALYZE_DT_DOUBLE 64

#define ANALYZE_DT_RGB 128

#define ANALYZE_DT_ALL 255


extern int ANALYZE_TEST;


typedef struct {

  int sizeof_hdr;

  char data_type[10];

  char db_name[18];

  int extents;

  short int session_error;

  char regular;

  char hkey_un0;

} ANALYZE_HEADER_KEY;


typedef struct {

  short int dim[8];

  short int unused8;

  short int unused9;

  short int unused10;

  short int unused11;

  short int unused12;

  short int unused13;

  short int unused14;

  short int datatype;

  short int bitpix;

  short int dim_un0;

  float pixdim[8];

  float vox_offset;

  float funused1;

  float funused2;

  float funused3;

  float cal_max;

  float cal_min;

  float compressed;

  float verified;

  int glmax;

  int glmin;

} ANALYZE_HEADER_IMGDIM;


typedef struct {

  char descrip[80];

  char aux_file[24];

  char orient;

  char originator[10];

  char generated[10];

  char scannum[10];

  char patient_id[10];

  char exp_date[10];

  char exp_time[10];

  char hist_un0[3];

  int views;

  int vols_added;

  int start_field;

  int field_skip;

  int omax;

  int omin;

  int smax;

  int smin;

} ANALYZE_HEADER_HISTORY;


typedef struct {

  ANALYZE_HEADER_KEY hk;

  ANALYZE_HEADER_IMGDIM dime;

  ANALYZE_HEADER_HISTORY hist;

  int little;

} ANALYZE_DSR;


/*****************************************************************************/


/*****************************************************************************/

/* ECAT 7.x */


#ifndef MatBLKSIZE

#define MatBLKSIZE 512

#endif

#ifndef MatFirstDirBlk

#define MatFirstDirBlk 2

#endif


#define ECAT7V_MAGICNR "MATRIX72v"

#define ECAT7S_MAGICNR "MATRIX7011"

#define ECAT7_SW_VERSION 72


#define ECAT7_BYTE      1

#define ECAT7_VAXI2     2

#define ECAT7_VAXI4     3

#define ECAT7_VAXR4     4

#define ECAT7_IEEER4    5

#define ECAT7_SUNI2     6

#define ECAT7_SUNI4     7

#define M68K_I2 SUN_I2

#define M68K_I4 SUN_I4


#define ECAT7_UNKNOWN   0

#define ECAT7_2DSCAN    1

#define ECAT7_IMAGE16   2

#define ECAT7_ATTEN     3

#define ECAT7_2DNORM    4

#define ECAT7_POLARMAP  5

#define ECAT7_VOLUME8   6

#define ECAT7_VOLUME16  7

#define ECAT7_PROJ      8

#define ECAT7_PROJ16    9

#define ECAT7_IMAGE8    10

#define ECAT7_3DSCAN    11

#define ECAT7_3DSCAN8   12

#define ECAT7_3DNORM    13

#define ECAT7_3DSCANFIT 14


#define ECAT7_Feet_First_Prone           0

#define ECAT7_Head_First_Prone           1

#define ECAT7_Feet_First_Supine          2

#define ECAT7_Head_First_Supine          3

#define ECAT7_Feet_First_Decubitus_Right 4

#define ECAT7_Head_First_Decubitus_Right 5

#define ECAT7_Feet_First_Decubitus_Left  6

#define ECAT7_Head_First_Decubitus_Left  7

#define ECAT7_Unknown_Orientation        8


extern char ecat7errmsg[128];

extern int ECAT7_TEST;


typedef struct ecat7_mainheader {  /* 512 bytes, if packed (not aligned) */

  char      magic_number[14];

  char      original_file_name[32];

  short int sw_version;

  short int system_type;

  short int file_type;

  char      serial_number[10];

  int       scan_start_time;

  char      isotope_name[8];

  float     isotope_halflife;

  char      radiopharmaceutical[32];

  float     gantry_tilt;

  float     gantry_rotation;

  float     bed_elevation;

  float     intrinsic_tilt;

  short int wobble_speed;

  short int transm_source_type;

  float     distance_scanned;

  float     transaxial_fov;

  short int angular_compression;

  short int coin_samp_mode;

  short int axial_samp_mode;

  float     ecat_calibration_factor;

  short int calibration_units;

  short int calibration_units_label;

  short int compression_code;

  char      study_type[12];

  char      patient_id[16];

  char      patient_name[32];

  char      patient_sex;

  char      patient_dexterity;

  float     patient_age;

  float     patient_height;

  float     patient_weight;

  int       patient_birth_date;

  char      physician_name[32];

  char      operator_name[32];

  char      study_description[32];

  short int acquisition_type;

  short int patient_orientation;

  char      facility_name[20];

  short int num_planes;

  short int num_frames;

  short int num_gates;

  short int num_bed_pos;

  float     init_bed_position;

  float     bed_position[15];

  float     plane_separation;

  short int lwr_sctr_thres;

  short int lwr_true_thres;

  short int upr_true_thres;

  char      user_process_code[10];

  short int acquisition_mode;

  float     bin_size;

  float     branching_fraction;

  int       dose_start_time;

  float     dosage;

  float     well_counter_corr_factor;

  char      data_units[32];

  short int septa_state;

  short int fill_cti[6];

} ECAT7_mainheader;


typedef struct ecat7_imageheader {

  short int data_type;

  short int num_dimensions;

  short int x_dimension;

  short int y_dimension;

  short int z_dimension;

  float     x_offset;

  float     y_offset;

  float     z_offset;

  float     recon_zoom;

  float     scale_factor;

  short int image_min;

  short int image_max;

  float     x_pixel_size;

  float     y_pixel_size;

  float     z_pixel_size;

  int       frame_duration;

  int       frame_start_time;

  short int filter_code;

  float     x_resolution;

  float     y_resolution;

  float     z_resolution;

  float     num_r_elements;

  float     num_angles;

  float     z_rotation_angle;

  float     decay_corr_fctr;

  int       processing_code;

  int       gate_duration;

  int       r_wave_offset;

  int       num_accepted_beats;

  float     filter_cutoff_frequency;

  float     filter_resolution;

  float     filter_ramp_slope;

  short int filter_order;

  float     filter_scatter_fraction;

  float     filter_scatter_slope;

  char      annotation[40];

  float     mt_1_1;

  float     mt_1_2;

  float     mt_1_3;

  float     mt_2_1;

  float     mt_2_2;

  float     mt_2_3;

  float     mt_3_1;

  float     mt_3_2;

  float     mt_3_3;

  float     rfilter_cutoff;

  float     rfilter_resolution;

  short int rfilter_code;

  short int rfilter_order;

  float     zfilter_cutoff;

  float     zfilter_resolution;

  short int zfilter_code;

  short int zfilter_order;

  float     mt_1_4;

  float     mt_2_4;

  float     mt_3_4;

  short int scatter_type;

  short int recon_type;

  short int recon_views;

  short int fill_cti[87];

  short int fill_user[49];

} ECAT7_imageheader;


typedef struct ecat7_scanheader {

  short int data_type;

  short int num_dimensions;

  short int num_r_elements;

  short int num_angles;

  short int corrections_applied;

  short int num_z_elements[64];

  short int ring_difference;

  short int storage_order;

  short int axial_compression;

  float     x_resolution;

  float     v_resolution;

  float     z_resolution;

  float     w_resolution;

  short int fill_gate[6];

  int       gate_duration;

  int       r_wave_offset;

  int       num_accepted_beats;

  float     scale_factor;

  short int scan_min;

  short int scan_max;

  int       prompts;

  int       delayed;

  int       multiples;

  int       net_trues;

  float     tot_avg_cor;

  float     tot_avg_uncor;

  int       total_coin_rate;

  int       frame_start_time;

  int       frame_duration;

  float     deadtime_correction_factor;

  short int fill_cti[90];

  short int fill_user[50];

  float     uncor_singles[128];

} ECAT7_scanheader;


typedef struct ecat7_2Dscanheader {

  short int data_type;

  short int num_dimensions;

  short int num_r_elements;

  short int num_angles;

  short int corrections_applied;

  short int num_z_elements;

  short int ring_difference;

  float     x_resolution;

  float     y_resolution;

  float     z_resolution;

  float     w_resolution;

  short int fill_gate[6];

  int       gate_duration;

  int       r_wave_offset;

  int       num_accepted_beats;

  float     scale_factor;

  short int scan_min;

  short int scan_max;

  int       prompts;

  int       delayed;

  int       multiples;

  int       net_trues;

  float     cor_singles[16];

  float     uncor_singles[16];

  float     tot_avg_cor;

  float     tot_avg_uncor;

  int       total_coin_rate;

  int       frame_start_time;

  int       frame_duration;

  float     deadtime_correction_factor;

  short int physical_planes[8];

  short int fill_cti[83];

  short int fill_user[50];

} ECAT7_2Dscanheader;


typedef struct ecat7_2Dnormheader {

  short int data_type;

  short int num_dimensions;

  short int num_r_elements;

  short int num_angles;

  short int num_z_elements;

  short int ring_difference;

  float     scale_factor;

  float     norm_min;

  float     norm_max;

  float     fov_source_width;

  float     norm_quality_factor;

  short int norm_quality_factor_code;

  short int storage_order;

  short int span;

  short int z_elements[64];

  short int fill_cti[123];

  short int fill_user[50];

} ECAT7_2Dnormheader;


typedef struct ecat7_attenheader {

  short int data_type;

  short int num_dimensions;

  short int attenuation_type;

  short int num_r_elements;

  short int num_angles;

  short int num_z_elements;

  short int ring_difference;

  float     x_resolution;

  float     y_resolution;

  float     z_resolution;

  float     w_resolution;

  float     scale_factor;

  float     x_offset;

  float     y_offset;

  float     x_radius;

  float     y_radius;

  float     tilt_angle;

  float     attenuation_coeff;

  float     attenuation_min;

  float     attenuation_max;

  float     skull_thickness;

  short int num_additional_atten_coeff;

  float     additional_atten_coeff[8];

  float     edge_finding_threshold;

  short int storage_order;

  short int span;

  short int z_elements[64];

  short int fill_cti[86];

  short int fill_user[50];

} ECAT7_attenheader;


typedef struct ecat7_normheader {

  short int data_type;

  short int num_r_elements;

  short int num_transaxial_crystals;

  short int num_crystal_rings;

  short int crystals_per_ring;

  short int num_geo_corr_planes;

  short int uld;

  short int lld;

  short int scatter_energy;

  float     norm_quality_factor;

  short int norm_quality_factor_code;

  float     ring_dtcor1[32];

  float     ring_dtcor2[32];

  float     crystal_dtcor[8];

  short int span;

  short int max_ring_diff;

  short int fill_cti[48];

  short int fill_user[50];

} ECAT7_normheader;


typedef struct ecat7_polmapheader {

  short int data_type;

  short int polar_map_type;

  short int num_rings;

  short int sectors_per_ring[32];

  float     ring_position[32];

  short int ring_angle[32];

  short int start_angle;

  short int long_axis_left[3];

  short int long_axis_right[3];

  short int position_data;

  short int image_min;

  short int image_max;

  float     scale_factor;

  float     pixel_size;

  int       frame_duration;

  int       frame_start_time;

  short int processing_code;

  short int quant_units;

  char      annotation[40];

  int       gate_duration;

  int       r_wave_offset;

  int       num_accepted_beats;

  char      polar_map_protocol[20];

  char      database_name[30];

  short int fill_cti[27];

  short int fill_user[27];

} ECAT7_polmapheader;


typedef struct {

  int id;

  int strtblk;

  int endblk;

  int status;

} ECAT7_MatDir;


typedef struct {

  int matrixNr;

  int matrixSpace;

  ECAT7_MatDir *matdir;

} ECAT7_MATRIXLIST;


typedef struct {

  int frame;

  int plane;

  int gate;

  int data;

  int bed;

} ECAT7_Matval;


/*****************************************************************************/


/*****************************************************************************/

/* ECAT 6.3 */


#define MatBLKSIZE 512

#define MatFirstDirBlk 2


#define BYTE_TYPE   1

#define VAX_I2      2

#define VAX_I4      3

#define VAX_R4      4

#define IEEE_R4     5

#define SUN_I2      6

#define SUN_I4      7


#define RAW_DATA    1

#define IMAGE_DATA  2

#define ATTN_DATA   3

#define NORM_DATA   4


#define ECAT63_SYSTEM_TYPE_DEFAULT 931

extern char ecat63errmsg[128];

extern int ECAT63_TEST;


typedef struct {

  int matnum;

  int strtblk;

  int endblk;

  int matstat;

} MatDir;


typedef struct {

  int matrixNr;

  int matrixSpace;

  MatDir *matdir;

} MATRIXLIST;


typedef struct {

  int frame;

  int plane;

  int gate;

  int data;

  int bed;

} Matval;


typedef struct ecat63_mainheader {

  char      ecat_format[14];

  char      fill1[14];

  char      original_file_name[20];

  short int sw_version;

  short int data_type;

  short int system_type;

  short int file_type;

  char      node_id[10];

  short int scan_start_day;

  short int scan_start_month;

  short int scan_start_year;

  short int scan_start_hour;

  short int scan_start_minute;

  short int scan_start_second;

  char      isotope_code[8];

  float     isotope_halflife;

  char      radiopharmaceutical[32];

  float     gantry_tilt;

  float     gantry_rotation;

  float     bed_elevation;

  short int rot_source_speed;

  short int wobble_speed;

  short int transm_source_type;

  float     axial_fov;

  float     transaxial_fov;

  short int transaxial_samp_mode;

  short int coin_samp_mode;

  short int axial_samp_mode;

  float     calibration_factor;

  short int calibration_units;

  short int compression_code;

  char      study_name[12];

  char      patient_id[16];

  char      patient_name[32];

  char      patient_sex;

  char      patient_age[10];

  char      patient_height[10];

  char      patient_weight[10];

  char      patient_dexterity;

  char      physician_name[32];

  char      operator_name[32];

  char      study_description[32];

  short int acquisition_type;

  short int bed_type;

  short int septa_type;

  char      facility_name[20];

  short int num_planes;

  short int num_frames;

  short int num_gates;

  short int num_bed_pos;

  float     init_bed_position;

  float     bed_offset[15];

  float     plane_separation;

  short int lwr_sctr_thres;

  short int lwr_true_thres;

  short int upr_true_thres;

  float     collimator;

  char      user_process_code[10];

  short int fill2[20];

} ECAT63_mainheader;


typedef struct ecat63_imageheader {

  char      fill1[126];

  short int data_type;

  short int num_dimensions;

  short int unused1;

  short int dimension_1;

  short int dimension_2;

  short int unused2[12];

  float     x_origin;

  float     y_origin;

  float     recon_scale;

  float     quant_scale;

  short int image_min;

  short int image_max;

  short int unused3[2];

  float     pixel_size;

  float     slice_width;

  int       frame_duration;

  int       frame_start_time;

  short int slice_location;

  short int recon_start_hour;

  short int recon_start_min;

  short int recon_start_sec;

  int       recon_duration;

  short int unused4[12];

  short int filter_code;

  int       scan_matrix_num;

  int       norm_matrix_num;

  int       atten_cor_mat_num;

  short int unused5[23];

  float     image_rotation;

  float     plane_eff_corr_fctr;

  float     decay_corr_fctr;

  float     loss_corr_fctr;

  float     intrinsic_tilt;

  short int unused6[30];

  short int processing_code;

  short int unused7;

  short int quant_units;

  short int recon_start_day;

  short int recon_start_month;

  short int recon_start_year;

  float     ecat_calibration_fctr;

  float     well_counter_cal_fctr;

  float     filter_params[6];

  char      annotation[40];

  short int fill2[26];

} ECAT63_imageheader;


typedef struct ecat63_scanheader {

  char      fill1[126];

  short int data_type;

  short int unused1[2];

  short int dimension_1;

  short int dimension_2;

  short int smoothing;

  short int processing_code;

  short int unused2[3];

  float     sample_distance;

  short int unused3[8];

  float     isotope_halflife;

  short int frame_duration_sec;

  int       gate_duration;

  int       r_wave_offset;

  short int unused4;

  float     scale_factor;

  short int unused5[3];

  short int scan_min;

  short int scan_max;

  int       prompts;

  int       delayed;

  int       multiples;

  int       net_trues;

  short int unused6[52];

  float     cor_singles[16];

  float     uncor_singles[16];

  float     tot_avg_cor;

  float     tot_avg_uncor;

  int       total_coin_rate;

  int       frame_start_time;

  int       frame_duration;

  float     loss_correction_fctr;

  short int fill2[22];

} ECAT63_scanheader;


typedef struct ecat63_normheader {

  char      fill1[126];

  short int data_type;

  short int unused1[2];

  short int dimension_1;

  short int dimension_2;

  short int unused2[23];

  float     scale_factor;

  short int unused3[6];

  float     fov_source_width;

  short int unused4[85];

  short int norm_hour;

  short int unused5;

  short int norm_minute;

  short int unused6;

  short int norm_second;

  short int unused7;

  short int norm_day;

  short int unused8;

  short int norm_month;

  short int unused9;

  short int norm_year;

  short int unused10;

  short int unused11[58];

} ECAT63_normheader;


typedef struct ecat63_attnheader {

  char      fill1[126];

  short int data_type;

  short int attenuation_type;

  short int unused1;

  short int dimension_1;

  short int dimension_2;

  short int unused2[23];

  float     scale_factor;

  float     x_origin;

  float     y_origin;

  float     x_radius;

  float     y_radius;

  float     tilt_angle;

  float     attenuation_coeff;

  float     sample_distance;

  short int unused3[149];

} ECAT63_attnheader;


typedef struct matdirnode {

  int    matnum;

  int    strtblk;

  int    endblk;

  int    matstat;

  struct matdirnode *next;

} MatDirNode ;


typedef struct matdirlist {

  int         nmats;

  MatDirNode *first;

  MatDirNode *last;

} MatDirList;


typedef struct matrixdata {

  int    mat_type;

  char  *shptr;

  char  *data_ptr;

  int    nviews;

  int    nelements;

  int    nblks;

  int    data_type;

} MatrixData ;


typedef struct matrix_file {

  ECAT63_mainheader *mhptr;

  MatDirList *dirlist;

  FILE *fptr ;

} Matrix_file;


/*****************************************************************************/


/*****************************************************************************/

/* SIF */


extern char siferrmsg[128];

extern int SIF_TEST;


typedef struct {

  time_t scantime;

  int frameNr;

  int colNr;

  int version;

  char studynr[MAX_STUDYNR_LEN+1];

  char isotope_name[8];

  double *x1;

  double *x2;

  double *prompts;

  double *randoms;

  double *trues;

  double *weights;

} SIF;


/*****************************************************************************/


/*****************************************************************************/

/* IMG */


#define IMG_STATUS_UNINITIALIZED 0

#define IMG_STATUS_INITIALIZED   1

#define IMG_STATUS_OCCUPIED      2

#define IMG_STATUS_ERROR         3


#define IMG_ERR_OK      0

#define IMG_ERR_CALLING 1

#define IMG_ERR_OOM     2


#define IMG_TYPE_UNKNOWN  0

#define IMG_TYPE_IMAGE    1

#define IMG_TYPE_RAW      2

#define IMG_TYPE_POLARMAP 3

#define IMG_TYPE_ATTN     4


#define IMG_UNKNOWN   0

#define IMG_E63       1

#define IMG_E7        2

#define IMG_E7_2D     3

#define IMG_POLARMAP  9

#define IMG_ANA       11

#define IMG_ANA_L     12 /* little endian variant */

#define IMG_INTERFILE 21

#define IMG_NIFTI_1D  31 /* dual file format */

#define IMG_NIFTI_1S  32 /* single file format */

#define IMG_MICROPET  41

#define IMG_FLAT      61

#define IMG_DICOM     100


#define IMG_DC_UNKNOWN 0

#define IMG_DC_CORRECTED 1

#define IMG_DC_NONCORRECTED 2


#define IMG_MODALITY_UNKNOWN 0

#define IMG_MODALITY_PET 1

#define IMG_MODALITY_MRI 2

#define IMG_MODALITY_CT 3

#define IMG_MODALITY_SPECT 4


#define SCANNER_UNKNOWN 0

#define SCANNER_ECAT931 12

#define SCANNER_ADVANCE 12096

#define SCANNER_HRPLUS 3

#define SCANNER_HRRT 4

/* these may change later */

#define SCANNER_MRI 5

#define SCANNER_STEVCT_PET 6

#define SCANNER_STEVCT_CT 7

#define SCANNER_DMI_PET 8

/* Concorde/MicropET scanners */

#define SCANNER_PRIMATE 2000

#define SCANNER_RODENT 2001

#define SCANNER_MICROPET2 2002

#define SCANNER_FOCUS_220 2500

#define SCANNER_FOCUS_120 2501

#define SCANNER_INVEON_DEDICATED_PET 5000

#define SCANNER_INVEON_MM_PET 5500

#define SCANNER_MR_PET_HEAD_INSERT 6000

#define SCANNER_TUEBINGEN_PET_MR 8000


#define MAX_POLARMAP_NUM_RINGS 32


enum {STATUS_OK,STATUS_FAULT,STATUS_NOMEMORY,STATUS_NOFILE,STATUS_UNKNOWNFORMAT,

    STATUS_UNSUPPORTED,STATUS_MISSINGMATRIX,STATUS_NOWRITEPERM,STATUS_DISKFULL,

    STATUS_NOMATLIST,STATUS_INVALIDMATLIST,STATUS_VARMATSIZE,STATUS_NOMAINHEADER,

    STATUS_NOSUBHEADER, STATUS_NOMATRIX, STATUS_UNSUPPORTEDAXIALCOMP,

    STATUS_NOIMGDATAFILE, STATUS_NOHEADERFILE, STATUS_INVALIDHEADER,

    STATUS_NOIMGDATA, STATUS_NOSIFDATA, STATUS_WRONGSIFDATA,

    STATUS_CANTWRITEIMGFILE, STATUS_CANTWRITEHEADERFILE, STATUS_WRONGFILETYPE,

    STATUS_CANNOTERASE, STATUS_CANNOTREAD, STATUS_CANNOTWRITE,

    STATUS_UNSUPPORTEDPOLARMAP, STATUS_INVALIDPOLARMAP};


extern int IMG_TEST;


typedef struct {

  int x;

  int y;

  int z;

  int f;

} IMG_PIXEL;


typedef struct {

  long long int   pxlNr;

  long long int   _pxlNr;

  IMG_PIXEL *p;

} IMG_PIXELS;


typedef struct {

  int x1;

  int x2;

  int y1;

  int y2;

  int z1;

  int z2;

  int f1;

  int f2;

} IMG_RANGE;


typedef struct {

  int x;

  int y;

  int z;

  int t;

} VOXEL_4D;


typedef struct {


  /*

   *  State of image

   */

  char status;

  const char *statmsg;


  /*

   *  Information on the study

   */

  char unit;

  float calibrationFactor;

  char studyNr[MAX_STUDYNR_LEN+1];

  char patientName[32];

  char patientID[16];

  char radiopharmaceutical[32];

  float isotopeHalflife;

  char decayCorrection;

  float branchingFraction;

  time_t scanStart;

  int orientation;

  char userProcessCode[11];

  char studyDescription[32];


  /*

   *  Information on the image

   */

  char type;

  float zoom;

  float axialFOV;

  float transaxialFOV;

  float sampleDistance;

  float sizex;

  float sizey;

  float sizez;

  float gapx;

  float gapy;

  float gapz;

  float resolutionx;

  float resolutiony;

  float resolutionz;

  int _dataType;

  int _fileFormat;

  int scanner;

  int modality;

  short int xform[2];

  float quatern[18];

  float mt[12];

  IFT ift;


  /*

   *  Definitions for polar map

   */

  int polarmap_num_rings;

  int polarmap_sectors_per_ring[MAX_POLARMAP_NUM_RINGS];

  float polarmap_ring_position[MAX_POLARMAP_NUM_RINGS];

  short int polarmap_ring_angle[MAX_POLARMAP_NUM_RINGS];

  short int polarmap_start_angle;


  /*

   *  Image data

   */

  /* Dimensions */

  unsigned short int dimt;

  unsigned short int dimx;

  unsigned short int dimy;

  unsigned short int dimz;


  float *_pxl;

  float **_col;

  float ***_row;

  float ****_pln;

  float *_header;

  /* Pointers for data to be used */

  float ****m;

  float ****plane;

  float ***row;

  float **column;

  float *pixel;

  int *planeNumber;


  /*

   *  Frame times

   */

  float *start;

  float *end;

  float *mid;


  /*

   *  Frame weights

   */

  char isWeight;

  float *weight;

  float *sd;

  float *prompts;

  float *randoms;


  /*

   *  Decay correction factors for each frame

   */

  float *decayCorrFactor;


  int errstatus;


} IMG;


/*****************************************************************************/


/*****************************************************************************/

/* IMG units (deprecated) */

#define IMGUNIT_UNKNOWN               CUNIT_UNKNOWN

#define IMGUNIT_CPS                   CUNIT_CPS

#define IMGUNIT_COUNTS                CUNIT_COUNTS

#define IMGUNIT_KBQ_PER_ML            CUNIT_KBQ_PER_ML

#define IMGUNIT_SEC_KBQ_PER_ML        CUNIT_SEC_KBQ_PER_ML

#define IMGUNIT_PER_SEC               CUNIT_PER_SEC

#define IMGUNIT_PER_MIN               CUNIT_PER_MIN

#define IMGUNIT_ML_PER_ML             CUNIT_ML_PER_ML

#define IMGUNIT_ML_PER_DL             CUNIT_ML_PER_DL

#define IMGUNIT_ML_PER_ML_PER_MIN     CUNIT_ML_PER_ML_PER_MIN

#define IMGUNIT_ML_PER_DL_PER_MIN     CUNIT_ML_PER_DL_PER_MIN

#define IMGUNIT_UNITLESS              CUNIT_UNITLESS

#define IMGUNIT_NCI_PER_ML            CUNIT_NCI_PER_ML

#define IMGUNIT_MBQ_PER_ML            CUNIT_MBQ_PER_ML

#define IMGUNIT_BQ_PER_ML             CUNIT_BQ_PER_ML

#define IMGUNIT_UCI_PER_ML            CUNIT_UCI_PER_ML

#define IMGUNIT_UMOL_PER_MIN_PER_100G CUNIT_UMOL_PER_MIN_PER_100G

#define IMGUNIT_MG_PER_MIN_PER_100G   CUNIT_MG_PER_MIN_PER_100G

/*****************************************************************************/


/*****************************************************************************/

/* Definitions for VOL, structure for 3D image volume */


extern int VOL_TEST;


typedef struct {

  int x;

  int y;

  int z;

} VOL_PIXEL;


typedef struct {

  int x1;

  int x2;

  int y1;

  int y2;

  int z1;

  int z2;

} VOL_RANGE;


typedef struct {

  char status;

  char *statmsg;

  int orientation;

  float sizex;

  float sizey;

  float sizez;

  unsigned short int dimx;

  unsigned short int dimy;

  unsigned short int dimz;


  float *_vxl;

  float *_col;

  float **_row;

  float ***_pln;


  float ***v;

  float ***plane;

  float **row;

  float *column;

  float *voxel;

} VOL;


typedef struct {

  char status;

  char *statmsg;

  int orientation;

  float sizex;

  float sizey;

  float sizez;

  unsigned short int dimx;

  unsigned short int dimy;

  unsigned short int dimz;

  float scale_factor;


  short int *_vxl;

  short int *_col;

  short int **_row;

  short int ***_pln;


  short int ***v;

  short int ***plane;

  short int **row;

  short int *column;

  short int *voxel;

} SVOL;


/*****************************************************************************/


/*****************************************************************************/

/* MicroPET */

#ifndef MAX_MICROPET_LINE_LEN

#define MAX_MICROPET_LINE_LEN 1024

#endif

extern int MICROPET_TEST;

/*****************************************************************************/


/*****************************************************************************/

/* NifTI */


#define NIFTI_HEADER_SIZE 348

#define NIFTI_HEADER_EXTENDER_SIZE 4


#define NIFTI_UNITS_UNKNOWN 0

#define NIFTI_UNITS_METER   1

#define NIFTI_UNITS_MM      2

#define NIFTI_UNITS_MICRON  4

#define NIFTI_UNITS_SEC     8

#define NIFTI_UNITS_MSEC   16

#define NIFTI_UNITS_USEC   24

#define NIFTI_UNITS_HERTZ   32

#define NIFTI_UNITS_PPM     40

#define NIFTI_UNITS_RADS    48


#define NIFTI_DT_NONE 0

#define NIFTI_DT_UNKNOWN 0

#define NIFTI_DT_BINARY 1

#define NIFTI_DT_UNSIGNED_CHAR 2

#define NIFTI_DT_SIGNED_SHORT 4

#define NIFTI_DT_SIGNED_INT 8

#define NIFTI_DT_FLOAT 16

#define NIFTI_DT_COMPLEX 32

#define NIFTI_DT_DOUBLE 64

#define NIFTI_DT_RGB 128

#define NIFTI_DT_ALL 255

#define NIFTI_DT_SIGNED_CHAR 256

#define NIFTI_DT_UNSIGNED_SHORT 512

#define NIFTI_DT_UNSIGNED_INT 768

#define NIFTI_DT_LONG_LONG 1024

#define NIFTI_DT_UNSIGNED_LONG_LONG 1280

#define NIFTI_DT_LONG_DOUBLE 1536

#define NIFTI_DT_DOUBLE_PAIR 1792

#define NIFTI_DT_LONG_DOUBLE_PAIR 2048

#define NIFTI_DT_RGBA 2304


#define NIFTI_INTENT_NONE 0

#define NIFTI_INTENT_CORREL 2

#define NIFTI_INTENT_TTEST 3

#define NIFTI_INTENT_FTEST 4

#define NIFTI_INTENT_ZSCORE 5

#define NIFTI_INTENT_CHISQ 6

#define NIFTI_INTENT_BETA 7

#define NIFTI_INTENT_BINOM 8

#define NIFTI_INTENT_GAMMA 9

#define NIFTI_INTENT_POISSON 10

#define NIFTI_INTENT_NORMAL 11

#define NIFTI_INTENT_FTEST_NONC 12

#define NIFTI_INTENT_CHISQ_NONC 13

#define NIFTI_INTENT_LOGISTIC 14

#define NIFTI_INTENT_LAPLACE 15

#define NIFTI_INTENT_UNIFORM 16

#define NIFTI_INTENT_TTEST_NONC 17

#define NIFTI_INTENT_WEIBULL 18

#define NIFTI_INTENT_CHI 19

#define NIFTI_INTENT_INVGAUSS 20

#define NIFTI_INTENT_EXTVAL 21

#define NIFTI_INTENT_PVAL 22

#define NIFTI_INTENT_LOGPVAL 23

#define NIFTI_INTENT_LOG10PVAL 24

#define NIFTI_INTENT_ESTIMATE 1001

#define NIFTI_INTENT_LABEL 1002

#define NIFTI_INTENT_NEURONAME 1003

#define NIFTI_INTENT_GENMATRIX 1004

#define NIFTI_INTENT_SYMMATRIX 1005

#define NIFTI_INTENT_DISPVECT 1006

#define NIFTI_INTENT_VECTOR 1007

#define NIFTI_INTENT_POINTSET 1008

#define NIFTI_INTENT_TRIANGLE 1009

#define NIFTI_INTENT_QUATERNION 1010

#define NIFTI_INTENT_DIMLESS 1011


#define NIFTI_XFORM_UNKNOWN 0

#define NIFTI_XFORM_SCANNER_ANAT 1

#define NIFTI_XFORM_ALIGNED_ANAT 2

#define NIFTI_XFORM_TALAIRACH 3

#define NIFTI_XFORM_MNI_152 4


typedef struct {

  int sizeof_hdr;

  char data_type[10];

  char db_name[18];

  int extents;

  short int session_error;

  char regular;

  char dim_info;


  short int dim[8];

  float intent_p1;

  float intent_p2;

  float intent_p3;

  short int intent_code;

  short int datatype;

  short int bitpix;

  short int slice_start;

  float pixdim[8];

  float vox_offset;

  float scl_slope;

  float scl_inter;

  short int slice_end;

  char slice_code;

  char xyzt_units;

  float cal_max;

  float cal_min;

  float slice_duration;

  float toffset;

  int glmax;

  int glmin;


  char descrip[80];

  char aux_file[24];

  short int qform_code;

  short int sform_code;

  float quatern_b;

  float quatern_c;

  float quatern_d;

  float qoffset_x;

  float qoffset_y;

  float qoffset_z;

  float srow_x[4];

  float srow_y[4];

  float srow_z[4];

  char intent_name[16];

  char magic[4];

} NIFTI_1_HEADER;


typedef struct {

  char extension[4];

} NIFTI_EXTENDER;


typedef struct {

  NIFTI_1_HEADER h;

  NIFTI_EXTENDER e;

  int byte_order;

} NIFTI_DSR;


/*****************************************************************************/


/*****************************************************************************/

/* analyze */

extern int anaExists(const char *dbname);

extern int anaExistsNew(const char *dbname, char *hdrfile, char *imgile, char *siffile);

extern int anaRemove(const char *dbname);

extern void anaRemoveFNameExtension(char *fname);

extern int anaDatabaseExists(const char *dbname, char *hdrfile, char *imgfile, char *siffile);

extern int anaMakeSIFName(const char *dbname, char *siffile);

extern int anaFlipping();

extern int anaReadHeader(char *filename, ANALYZE_DSR *h);

extern int anaReadImagedata(FILE *fp, ANALYZE_DSR *h, int frame, float *data);

extern int anaWriteHeader(char *filename, ANALYZE_DSR *h);

extern int anaPrintHeader(ANALYZE_DSR *h, FILE *fp);

extern int anaEditHeader(ANALYZE_DSR *h, char *field, char *value);

/*****************************************************************************/


/*****************************************************************************/

/* ecat7 */


/* Read functions */

extern int ecat7ReadMainheader(FILE *fp, ECAT7_mainheader *h);

extern int ecat7ReadImageheader(FILE *fp, int blk, ECAT7_imageheader *h);

extern int ecat7ReadAttenheader(FILE *fp, int blk, ECAT7_attenheader *h);

extern int ecat7ReadPolmapheader(FILE *fp, int blk, ECAT7_polmapheader *h);

extern int ecat7ReadNormheader(FILE *fp, int blk, ECAT7_normheader *h);

extern int ecat7ReadScanheader(FILE *fp, int blk, ECAT7_scanheader *h);

extern int ecat7Read2DScanheader(FILE *fp, int blk, ECAT7_2Dscanheader *h);

extern int ecat7Read2DNormheader(FILE *fp, int blk, ECAT7_2Dnormheader *h);

extern int ecat7ReadMatrixdata(FILE *fp, int start_block, int block_nr, char *data, int dtype);

extern float ecat7rFloat(void *bufi, int isvax, int islittle);

extern int ecat7rInt(void *bufi, int isvax, int islittle);

extern int ecat7ReadImageMatrix(FILE *fp, int first_block, int last_block,

  ECAT7_imageheader *h, float **fdata);

extern int ecat7Read2DScanMatrix(FILE *fp, int first_block, int last_block,

  ECAT7_2Dscanheader *h, float **fdata);

extern int ecat7ReadScanMatrix(FILE *fp, int first_block, int last_block,

  ECAT7_scanheader *h, float **fdata);

extern int ecat7ReadPolarmapMatrix(FILE *fp, int first_block, int last_block,

  ECAT7_polmapheader *h, float **fdata);

extern int ecat7pxlbytes(short int data_type);


/* Matrix list functions */

extern void ecat7InitMatlist(ECAT7_MATRIXLIST *mlist);

extern void ecat7EmptyMatlist(ECAT7_MATRIXLIST *mlist);

extern int ecat7ReadMatlist(FILE *fp, ECAT7_MATRIXLIST *ml, int verbose);

extern void ecat7PrintMatlist(ECAT7_MATRIXLIST *ml);

extern int ecat7EnterMatrix(FILE *fp, int matrix_id, int block_nr);

extern int ecat7_val_to_id(int frame, int plane, int gate, int data, int bed);

extern void ecat7_id_to_val(int matrix_id, ECAT7_Matval *matval);

extern void ecat7SortMatlistByPlane(ECAT7_MATRIXLIST *ml);

extern void ecat7SortMatlistByFrame(ECAT7_MATRIXLIST *ml);

extern int ecat7CheckMatlist(ECAT7_MATRIXLIST *ml);

extern int ecat7DeleteLateFrames(ECAT7_MATRIXLIST *ml, int frame_nr);

extern int ecat7GetPlaneAndFrameNr(

  ECAT7_MATRIXLIST *mlist, ECAT7_mainheader *h, int *plane_nr, int *frame_nr);

extern int ecat7GetMatrixBlockSize(ECAT7_MATRIXLIST *mlist, int *blk_nr);

extern int ecat7GetNums(ECAT7_MATRIXLIST *ml, ECAT7_mainheader *mh, FILE *fp,

  short int *num_planes, short int *num_frames, short int *num_gates, short int *num_bed_pos);

extern int ecat7GatherMatlist(ECAT7_MATRIXLIST *ml, short int do_planes,

  short int do_frames, short int do_gates, short int do_beds);


/* Write functions */

extern int ecat7WriteMainheader(FILE *fp, ECAT7_mainheader *h);

extern int ecat7WriteImageheader(FILE *fp, int blk, ECAT7_imageheader *h);

extern int ecat7WriteAttenheader(FILE *fp, int blk, ECAT7_attenheader *h);

extern int ecat7WritePolmapheader(FILE *fp, int blk, ECAT7_polmapheader *h);

extern int ecat7WriteNormheader(FILE *fp, int blk, ECAT7_normheader *h);

extern int ecat7WriteScanheader(FILE *fp, int blk, ECAT7_scanheader *h);

extern int ecat7Write2DScanheader(FILE *fp, int blk, ECAT7_2Dscanheader *h);

extern int ecat7Write2DNormheader(FILE *fp, int blk, ECAT7_2Dnormheader *h);

extern int ecat7WritePolarmapMatrix(FILE *fp, int matrix_id, ECAT7_polmapheader *h, float *fdata);

extern int ecat7WriteMatrixdata(FILE *fp, int start_block, char *data, long long pxl_nr, int pxl_size);

/*extern void ecat7wFloat(float *bufi, void *bufo, int tovax, int islittle);*/

/*extern void ecat7wInt(int *bufi, void *bufo, int tovax, int islittle);*/

extern FILE *ecat7Create(const char *fname, ECAT7_mainheader *h);

extern int ecat7WriteImageMatrix(FILE *fp, int matrix_id, ECAT7_imageheader *h, float *fdata);

extern int ecat7Write2DScanMatrix(FILE *fp, int matrix_id, ECAT7_2Dscanheader *h, float *fdata);

extern int ecat7WriteScanMatrix(FILE *fp, int matrix_id, ECAT7_scanheader *h, float *fdata);

extern int ecat7_is_scaling_needed(float amax, float *data, long long nr);


/* Printing functions */

extern void ecat7PrintMainheader(ECAT7_mainheader *h, FILE *fp);

extern void ecat7PrintImageheader(ECAT7_imageheader *h, FILE *fp);

extern void ecat7PrintScanheader(ECAT7_scanheader *h, FILE *fp);

extern void ecat7PrintAttenheader(ECAT7_attenheader *h, FILE *fp);

extern void ecat7PrintPolmapheader(ECAT7_polmapheader *h, FILE *fp);

extern void ecat7PrintNormheader(ECAT7_normheader *h, FILE *fp);

extern void ecat7Print2DScanheader(ECAT7_2Dscanheader *h, FILE *fp);

extern void ecat7Print2DNormheader(ECAT7_2Dnormheader *h, FILE *fp);

extern int ecat7PrintSubheader(ECAT7_mainheader mh, FILE *fp, int plane, int frame, FILE *ofp);


/* Descriptive strings for printing */

extern char* ecat7filetype(short int file_type);

extern char* ecat7acquisitiontype(short int acquisition_type);

extern char* ecat7datatype(short int data_type);


/* Header edit functions */

extern int ecat7EditMHeader(ECAT7_mainheader *h, char *field, char *value, int verbose);

extern int ecat7EditSHeader(ECAT7_scanheader *h, char *field, char *value, int verbose);

extern int ecat7EditVHeader(ECAT7_imageheader *h, char *field, char *value, int verbose);

/*****************************************************************************/


/*****************************************************************************/

/* ECAT 6.3 */


/* ECAT 6.3 Read functions */

extern int ecat63ReadMainheader(FILE *fp, ECAT63_mainheader *h);

extern int ecat63ReadImageheader(FILE *fp, int blk, ECAT63_imageheader *h, int verbose, char *errmsg);

extern int ecat63ReadScanheader(FILE *fp, int blk, ECAT63_scanheader *h, int verbose, char *errmsg);

extern int ecat63ReadAttnheader(FILE *fp, int blk, ECAT63_attnheader *h, int verbose, char *errmsg);

extern int ecat63ReadNormheader(FILE *fp, int blk, ECAT63_normheader *h, int verbose, char *errmsg);

extern int ecat63ReadMatdata(FILE *fp, int strtblk, int blkNr, char *data, int dtype);

extern int ecat63ReadImageMatrix(FILE *fp, int strtblk, int lastblk, ECAT63_imageheader *h, float **f);

extern int ecat63ReadScanMatrix(FILE *fp, int strtblk, int lastblk, ECAT63_scanheader *h, float **f);

extern int ecat63ReadAttnMatrix(FILE *fp, int strtblk, int lastblk, ECAT63_attnheader *h, float **f);

extern float ecat63rFloat(void *bufi, int isvax, int islittle);

extern int ecat63rInt(void *bufi, int isvax, int islittle);

extern int ecat63pxlbytes(short int data_type);


/* ECAT 6.3 Matrix list functions */

extern void ecat63InitMatlist(MATRIXLIST *mlist);

extern void ecat63EmptyMatlist(MATRIXLIST *mlist);

extern int ecat63ReadMatlist(FILE *fp, MATRIXLIST *ml, int verbose);

extern void ecat63PrintMatlist(MATRIXLIST *ml);

extern int mat_numcod(int frame, int plane, int gate, int data, int bed);

extern void mat_numdoc(int matnum, Matval *matval);

extern int ecat63Matenter(FILE *fp, int matnum, int blkNr);

extern void ecat63SortMatlistByPlane(MATRIXLIST *ml);

extern void ecat63SortMatlistByFrame(MATRIXLIST *ml);

extern int ecat63CheckMatlist(MATRIXLIST *ml);

extern int ecat63DeleteLateFrames(MATRIXLIST *ml, int frame_nr);

extern int ecat63GetMatrixBlockSize(MATRIXLIST *mlist, int *blk_nr);

extern int ecat63GetPlaneAndFrameNr(

  MATRIXLIST *mlist, ECAT63_mainheader *h, int *plane_nr, int *frame_nr);

extern int ecat63GetNums(

  MATRIXLIST *ml, short int *num_planes, short int *num_frames,

  short int *num_gates, short int *num_bed_pos);

extern int ecat63GatherMatlist(

  MATRIXLIST *ml, short int do_planes, short int do_frames,

  short int do_gates, short int do_beds);


/* ECAT 6.3 Write functions */

extern int ecat63WriteMainheader(FILE *fp, ECAT63_mainheader *h);

extern int ecat63WriteImageheader(FILE *fp, int block, ECAT63_imageheader *h);

extern int ecat63WriteScanheader(FILE *fp, int block, ECAT63_scanheader *h);

extern int ecat63WriteAttnheader(FILE *fp, int block, ECAT63_attnheader *h);

extern int ecat63WriteNormheader(FILE *fp, int block, ECAT63_normheader *h);

extern FILE *ecat63Create(const char *fname, ECAT63_mainheader *h);

extern int ecat63WriteMatdata(FILE *fp, int strtblk, char *data, long long pxlNr, int pxlSize);

extern int ecat63WriteScan(FILE *fp, int matnum, ECAT63_scanheader *h, void *data);

extern int ecat63WriteImage(FILE *fp, int matnum, ECAT63_imageheader *h, void *data);

extern int ecat63WriteNorm(FILE *fp, int matnum, ECAT63_normheader *h, void *data);

extern int ecat63WriteAttn(FILE *fp, int matnum, ECAT63_attnheader *h, void *data);

extern int ecat63WriteImageMatrix(FILE *fp, int matnum, ECAT63_imageheader *h, float *fdata);

extern int ecat63WriteScanMatrix(FILE *fp, int matnum, ECAT63_scanheader *h, float *fdata);

extern void ecat63wFloat(float *bufi, void *bufo, int tovax, int islittle);

extern void ecat63wInt(int *bufi, void *bufo, int tovax, int islittle);

extern int ecat63_is_scaling_needed(float amax, float *data, long long nr);

extern struct tm* ecat63ScanstarttimeToTm(const ECAT63_mainheader *h, struct tm *tm);

extern time_t ecat63Scanstarttime(const ECAT63_mainheader *h);


/* ECAT 6.3 Printing functions */

extern void ecat63PrintMainheader(ECAT63_mainheader *h, FILE *fp);

extern void ecat63PrintImageheader(ECAT63_imageheader *h, FILE *fp);

extern void ecat63PrintScanheader(ECAT63_scanheader *h, FILE *fp);

extern void ecat63PrintAttnheader(ECAT63_attnheader *h, FILE *fp);

extern void ecat63PrintNormheader(ECAT63_normheader *h, FILE *fp);

extern int ecat6PrintSubheader(ECAT63_mainheader mh, FILE *fp, int plane, int frame, FILE *ofp);

extern char *ecat63Datatype(short int dtype);

extern char *ecat63Unit(short int dunit);

extern void float2parts(float *buf);

extern char* ecat63ScanstarttimeInt(const ECAT63_mainheader *h, char *buf);


/* Header edit functions */

extern int ecat63CopyMainheader(ECAT63_mainheader *h1, ECAT63_mainheader *h2);

extern int ecat63CopyScanheader(ECAT63_scanheader *h1, ECAT63_scanheader *h2);

extern int ecat63EditMHeader(ECAT63_mainheader *h, char *field, char *value, int verbose);

/*****************************************************************************/


/*****************************************************************************/

/* IMG data functions */


/* Initialization and memory handling of img data */

extern void imgInit(IMG *image);

extern void imgEmpty(IMG *image);

extern int imgAllocate(IMG *image, int planes, int rows, int columns, int frames);

extern int imgAllocateWithHeader(IMG *image, int planes, int rows, int columns, int frames, IMG *image_from);

extern int imgDup(IMG *img1, IMG *img2);


/* Retrieving image information */

extern char *imgStatus(int status_index);

extern void imgSetStatus(IMG *img, int status_index);

extern void imgInfo(IMG *image);

extern int imgCopyhdr(IMG *image1, IMG *image2);

extern int imgExtractRange(IMG *img1, IMG_RANGE r, IMG *img2);

extern int imgExistentTimes(IMG *img);

extern int imgExistentCounts(IMG *img);

extern unsigned long long imgNaNs(IMG *img, int fix);

/*****************************************************************************/


/*****************************************************************************/

/* IMG vs SIF */

extern int sif2img(

  SIF *sif, IMG *img, int copy_header, int copy_frames, int copy_counts, int verbose

);

extern int img2sif(

  IMG *img, SIF *sif, int copy_header, int copy_frames, int copy_counts, int verbose

);

/*****************************************************************************/


/*****************************************************************************/

/* IMG decay correction */

extern int imgDecayCorrection(IMG *img, int mode);

extern char *imgIsotope(IMG *img);

extern int imgSetDecayCorrFactors(IMG *image, int mode);

extern int imgBranchingCorrection(IMG *image, int mode, int verbose, char *status);

/*****************************************************************************/


/*****************************************************************************/

/* IMG file i/o */


/* General */

extern int imgRead(const char *fname, IMG *img);

//int extern imgReadMainHeader(const char *fname, IMG *img);

extern int imgWrite(const char *fname, IMG *img);

extern int imgReadHeader(const char *fname, IMG *img, int format);

//extern int imgReadNextFrame(char *fname, IMG *img);

extern int imgReadFrame(const char *fname, int frame_to_read, IMG *img, int frame_index);

extern int imgWriteFrame(const char *fname, int frame_to_write, IMG *img, int frame_index);

extern void imgFormatFromFName(IMG *img, const char *fname);

extern int imgFormatDetermine(

  const char *fname, char *basename, char *hdrfile, char *imgfile, char *siffile, int *file_format,

  int *scanner, int *type, int *modality, int verbose

);


/* ECAT 6.3 and IMG */

extern int ecat63ReadAllToImg(const char *fname, IMG *img);

extern int ecat63WriteAllImg(const char *fname, IMG *img);

extern int ecat63ReadPlaneToImg(const char *fname, IMG *img);

extern int ecat63AddImg(const char *fname, IMG *img);

extern void imgGetEcat63MHeader(IMG *img, ECAT63_mainheader *h);

extern void imgSetEcat63MHeader(IMG *img, ECAT63_mainheader *h);

extern int imgEcat63Supported(ECAT63_mainheader *h);

extern int imgGetEcat63Fileformat(ECAT63_mainheader *h);

extern int imgReadEcat63Header(const char *fname, IMG *img);

extern int imgReadEcat63FirstFrame(const char *fname, IMG *img);

extern int imgReadEcat63Frame(const char *fname, int frame_to_read, IMG *img, int frame_index);

extern int imgWriteEcat63Frame(const char *fname, int frame_to_write, IMG *img, int frame_index);

extern void imgSetEcat63SHeader(IMG *img, void *h);


/* ECAT 7.x and IMG */

extern int imgReadEcat7(const char *fname, IMG *img);

extern int imgWriteEcat7(const char *fname, IMG *img);

extern int imgWrite2DEcat7(const char *fname, IMG *img);

extern int imgWritePolarmap(const char *fname, IMG *img);


extern void imgGetEcat7MHeader(IMG *img, ECAT7_mainheader *h);

extern void imgSetEcat7MHeader(IMG *img, ECAT7_mainheader *h);

extern int imgReadEcat7Header(const char *fname, IMG *img);

extern int imgEcat7Supported(ECAT7_mainheader *h);

extern int imgReadEcat7Frame(const char *fname, int frame_to_read, IMG *img, int frame_index);

extern int imgReadEcat7FirstFrame(const char *fname, IMG *img);

extern int imgGetEcat7Fileformat(ECAT7_mainheader *h);

extern int imgWriteEcat7Frame(const char *fname, int frame_to_write, IMG *img, int frame_index);

extern void imgSetEcat7SHeader(IMG *img, void *h);


/* Analyze format and IMG */

extern int imgReadAnalyze(const char *dbname, IMG *img);

extern int imgWriteAnalyze(const char *dbname, IMG *img);

extern int imgReadAnalyzeHeader(const char *dbname, IMG *img);

extern int imgGetAnalyzeHeader(IMG *img, ANALYZE_DSR *h);

extern int imgSetAnalyzeHeader(IMG *img, const char *dbname, ANALYZE_DSR *h, float fmin, float fmax);

extern int imgReadAnalyzeFrame(const char *dbname, int frame_to_read, IMG *img, int frame_index);

extern int imgReadAnalyzeFirstFrame(const char *fname, IMG *img);

extern int imgWriteAnalyzeFrame(

  const char *fname, int frame_to_write, IMG *img, int frame_index, float fmin, float fmax

);


/* MicroPET format and IMG */

extern int imgMicropetToEcat7(char *upetname, char *ecatfile, int verbose);

extern int imgMicropetPETToEcat7(FILE *fph, FILE *fpi, char *ecatfile, int verbose);

extern int imgMicropetCTToEcat7(FILE *fph, FILE *fpi, char *ecatfile, int verbose);

extern int imgGetMicropetMainHeader(FILE *fp, IMG *img, float *calibration_factor, int verbose);

extern int imgGetMicropetFrameHeader(FILE *fp, IMG *img, int frame_index, int verbose);

extern int imgGetMicropetSIF(FILE *fp, SIF *sif);

extern int imgGetMicropetHeader(IMG *img);

extern int imgReadMicropetHeader(const char *dbname, IMG *img);

extern int imgReadMicropetFrame(const char *fname, int frame_to_read, IMG *img, int frame_index);

extern int imgReadMicropetFirstFrame(const char *fname, IMG *img);

extern int imgReadMicropet(const char *fname, IMG *img);


/* NifTI and IMG */

extern int imgReadNifti(const char *filename, IMG *img, int verbose);

extern int imgReadNiftiFirstFrame(const char *filename, IMG *img, int verbose);

extern int imgReadNiftiHeader(const char *filename, IMG *img, int verbose);

extern int imgGetNiftiHeader(IMG *img, NIFTI_DSR *h, int verbose);

extern int imgReadNiftiFrame(

  const char *filename, int frame_to_read, IMG *img, int frame_index, int verbose

);

extern int imgSetNiftiHeader(

  IMG *img, const char *dbname, NIFTI_DSR *dsr, float fmin, float fmax, int verbose

);

extern int imgWriteNiftiFrame(

  const char *dbname, int frame_to_write, IMG *img, int frame_index,

  float fmin, float fmax, int verbose

);

extern int imgWriteNifti(const char *dbname, IMG *img, int save_sif, int verbose);

/*****************************************************************************/


/*****************************************************************************/

/* imgcomp */

extern int imgMatch(IMG *img1, IMG *img2, float accuracy);

extern int imgMatchMatrix(IMG *img1, IMG *img2, double accuracy);

extern int imgMatchHeader(IMG *img1, IMG *img2);

extern int imgMatchTransform(IMG *img1, IMG *img2);

extern int imgMatchFrames(IMG *img1, IMG *img2);

extern int imgMatchPlanes(IMG *img1, IMG *img2);

extern int imgMaxDifference(

  IMG *img1, IMG *img2, VOXEL_4D *absdiff, float *abs_max, VOXEL_4D *reldiff, float *rel_max

);

extern int imgSS(IMG *img1, IMG *img2, double *ss);

extern int imgMatchMatrixSize(IMG *img1, IMG *img2);

/*****************************************************************************/


/*****************************************************************************/

/* imgminmax */

extern int imgMax(IMG *img, float *maxvalue);

extern int imgAbsMax(IMG *img, float *maxvalue);

extern int imgRangeMinMax(

  IMG *img, IMG_RANGE *r, IMG_PIXEL *maxp, float *maxv, IMG_PIXEL *minp, float *minv

);

extern int imgMinMax(IMG *img, float *minvalue, float *maxvalue);

extern int imgFrameMinMax(IMG *img, int frame, float *minvalue, float *maxvalue);

extern int imgReadMinMax(const char *fname, float *fmin, float *fmax);

extern int imgSmoothMax(IMG *img, float *maxvalue, IMG_PIXEL *p);

extern int imgGetPeak(IMG *img, float beforeTime, IMG_PIXEL *p, int verbose);

extern int imgGetMaxFrame(IMG *img, IMG *mimg, int verbose);

extern int imgGetMaxTime(IMG *img, IMG *mimg, const int w, int verbose);

extern int imgAvg(IMG *img, IMG_RANGE *r, float *avg);

extern float f_kth_smallest(float *data, long long int n, long long int k);

extern float fmedian(float *data, long long int n);

extern float fmean(float *data, long long int n, float *sd);

extern void fMinMaxFin(float *data, long long int n, float *fmin, float *fmax);

/*****************************************************************************/


/*****************************************************************************/

/* imgunits */

extern int imgUnitId(char *unit);

extern void imgUnitFromEcat(IMG *img, int ecat_unit);

extern void imgUnitFromEcat7(IMG *img, ECAT7_mainheader *h);

extern int imgUnitToEcat6(IMG *img);

extern void imgUnitToEcat7(IMG *img, ECAT7_mainheader *h);

extern char *imgUnit(int dunit);

extern int imgSetUnit(IMG *img, char *unit);

/*****************************************************************************/


/*****************************************************************************/

/* interfile */

extern int interfile_read(char headerName[256], char searchWord[256],

  char returnValue[256], char errorMessage[300]);

extern int interfileIsHeader(const char *hdrfile, char *imgfile);

extern int interfileExists(

  const char *fname, char *hdrfile, char *imgfile, int verbose);

/*****************************************************************************/


/*****************************************************************************/

/* micropet */

extern int upetHeaderReadParameter(FILE *fp, char *parameter, char *value);

extern int upetIsHeader(char *hdrfile);

extern int upetExists(const char *upetname, char *hdrfile, char *imgfile, int verbose);

extern int upetGetImageDimensions(FILE *fp, int *z, int *x, int *y, int *f);

extern int upetScanStart(FILE *fp, time_t *scant);

extern int upetReadImagedata(FILE *fp, IFT *ift, int frame, float *data);

/*****************************************************************************/


/*****************************************************************************/

/* nifti */

extern int niftiExists(

  const char *dbname, char *hdrfile, char *imgile, char *siffile,

  NIFTI_DSR *header, int verbose, char *status

);

extern int niftiCreateFNames(

  const char *filename, char *hdrfile, char *imgfile, char *siffile,

  int fileformat

);

extern int niftiRemove(

  const char *dbname, int fileformat, int verbose

);

extern int niftiReadHeader(

  char *filename, NIFTI_DSR *h, int verbose, char *status

);

extern int niftiPrintHeader(NIFTI_DSR *h, FILE *fp);

extern void niftiRemoveFNameExtension(char *fname);

extern int niftiReadImagedata(

  FILE *fp, NIFTI_DSR *h, int frame, float *data, int verbose, char *status

);

extern int niftiWriteHeader(

  char *filename, NIFTI_DSR *dsr, int verbose, char *status

);

/*****************************************************************************/


/*****************************************************************************/

/* sif */

//extern void libsif_printdate(FILE *fp);

extern int sifRead(char *filename, SIF *data);

extern int sifWrite(SIF *data, char *filename);

extern void sifPrint(SIF *data);

extern void sifEmpty(SIF *data);

extern void sifInit(SIF *data);

extern int sifSetmem(SIF *data, int frameNr);

extern void sifWeight(SIF *data, double halflife);

extern void sifWeightByFrames(SIF *data, double halflife);

extern void sifWeightNorm(SIF *data);

extern void sifModerateTrues(SIF *sif, double limit);

extern void sifModerateWeights(SIF *sif, double limit);

extern int sifExistentCounts(SIF *sif);

/* Deprecated */

#define readSIF sifRead

#define writeSIF sifWrite

#define printSIF sifPrint

#define emptySIF sifEmpty

#define weightSIF sifWeight

#define initSIF sifInit

#define setmemSIF sifSetmem

/*****************************************************************************/


/*****************************************************************************/

/* ecat7ift */


typedef struct {

  int mnum;

  ECAT7_Matval matval;

  IFT sh;

  float *f;

} ECAT_MATRIX;


typedef struct {

  IFT mh;

  int nr;

  ECAT_MATRIX *m;

} ECAT_HEADERS;


/* Functions */

extern void ematInitiate(ECAT_MATRIX *emat);

extern void ehdrInitiate(ECAT_HEADERS *ehdr);

extern void ematEmpty(ECAT_MATRIX *emat);

extern void ehdrEmpty(ECAT_HEADERS *ehdr);

extern int ehdrAllocate(ECAT_HEADERS *ehdr, int nr);

extern int ecat7MHeaderToIFT(ECAT7_mainheader *h, IFT *ift, int verbose);

extern int ecat7MainheaderFromIFT(ECAT7_mainheader *h, IFT *ift, int verbose);

extern int ecat7ImageheaderToIFT(ECAT7_imageheader *h, IFT *ift, int verbose);

extern int ecat7ScanheaderToIFT(ECAT7_scanheader *h, IFT *ift, int verbose);

extern int ecat7ReadSubheaderToIFT(FILE *fp, ECAT7_mainheader *h, int strtblk,

  IFT *ift, int verbose);

extern int ecat7WriteSubheaderFromIFT(FILE *fp, ECAT7_mainheader *h, int strtblk,

  IFT *ift, int verbose);

extern int ecat7ReadHeaders(const char *fname, ECAT_HEADERS *ehdr, int verbose);

extern int ecat7WriteHeaders(const char *fname, ECAT_HEADERS *ehdr, int verbose);

/*****************************************************************************/


/*****************************************************************************/

/* ird */

extern int string_to_xyzf(const char *str, IMG_PIXEL *v);

extern int irdReorder(IMG_RANGE *img_range);

extern int irdRead(char *irdfile, IMG_RANGE *img_range, char *status);

extern int irdCheck(IMG_RANGE *r, IMG *img);

/*****************************************************************************/


/*****************************************************************************/

/* vol */

/* 4-byte floats */

extern void volInit(VOL *vol);

extern void volEmpty(VOL *vol);

extern int volAllocate(VOL *vol, int planes, int rows, int columns);

extern int img2vol(IMG *img, VOL *vol, int frame);

extern int vol2img(VOL *vol, IMG *img, int frame);

extern void volInfo(VOL *vol, FILE *fp);

extern void volContents(VOL *vol, VOL_RANGE r, FILE *fp);

extern int volMax(

  VOL *vol, VOL_RANGE *r,

  VOL_PIXEL *maxp, float *maxv, VOL_PIXEL *minp, float *minv

);

extern int volAvg(VOL *vol, VOL_RANGE *r, float *avg);

/* 2-byte short ints */

extern void svolInit(SVOL *svol);

extern void svolEmpty(SVOL *svol);

extern int svolAllocate(SVOL *svol, int planes, int rows, int columns);

extern int img2svol(IMG *img, SVOL *svol, int frame);

extern int svol2img(SVOL *svol, IMG *img, int frame);

extern void svolInfo(SVOL *svol, FILE *fp);

/* General */

extern int vrdReorder(VOL_RANGE *vol_range);

extern int vrdVxlNr(VOL_RANGE *vol_range);

extern int vrd2vol(VOL_RANGE *r, VOL *vol, float in, float out, char *status);

extern int vrdRead(char *vdffile, VOL_RANGE *vol_range, char *status);

extern int string_to_xyz(char *str, int *x, int *y, int *z);

/*****************************************************************************/


/*****************************************************************************/

/* pixel */

extern void pxlInit(IMG_PIXELS *pxl);

extern void pxlFree(IMG_PIXELS *pxl);

extern int pxlAllocate(IMG_PIXELS *pxl, long long int pxlNr);

extern int pxlAllocateMore(IMG_PIXELS *pxl, long long int pxlNr);

extern int pxlMakeRoom(IMG_PIXELS *list, long long int i, long long int n);

extern int pxlAdd(IMG_PIXELS *list, IMG_PIXEL *pxl);

extern int pxlGet(IMG_PIXELS *list, long long int i, IMG_PIXEL *pxl);

extern long long int pxlAddFromMask(IMG_PIXELS *list, IMG *img);

extern void pxlMove(IMG_PIXELS *list, long long int from, long long int to);

extern int pxlRm(IMG_PIXELS *list, long long int index);

extern long long int pxlRmDuplicates(IMG_PIXELS *list);

extern int pxlWrite(IMG_PIXELS *pxl, FILE *fp, char *status);

extern int pxlRead(IMG_PIXELS *pxl, const char *fname, char *status);

/*****************************************************************************/


/*****************************************************************************/

/* DICOM */


typedef struct DCMTAG {

  unsigned short int group;

  unsigned short int element;

} DCMTAG;


typedef enum {

  DCM_TRUID_UNKNOWN,

  DCM_TRUID_LEI,

  DCM_TRUID_LEE,

  DCM_TRUID_BEE,

  DCM_TRUID_JPEG50,

  DCM_TRUID_JPEG51,

  DCM_TRUID_JPEG70,

  DCM_TRUID_JPEG80,

  DCM_TRUID_JPEG81,

  DCM_TRUID_JPEG90,

  DCM_TRUID_JPEG91,

  DCM_TRUID_JPEG92,

  DCM_TRUID_JPEG93,

  DCM_TRUID_MPEG100,

  DCM_TRUID_MPEG102,

  DCM_TRUID_MPEG103,

  DCM_TRUID_RLE,

  DCM_TRUID_RFC,

  DCM_TRUID_XML,

  DCM_TRUID_INVALID

} dcmtruid;


typedef enum {

  DCM_VR_AE,

  DCM_VR_AS,

  DCM_VR_AT,

  DCM_VR_CS,

  DCM_VR_DA,

  DCM_VR_DS,

  DCM_VR_DT,

  DCM_VR_FL,

  DCM_VR_FD,

  DCM_VR_IS,

  DCM_VR_LO,

  DCM_VR_LT,

  DCM_VR_OB,

  DCM_VR_OD,

  DCM_VR_OF,

  DCM_VR_OL,

  DCM_VR_OW,

  DCM_VR_PN,

  DCM_VR_SH,

  DCM_VR_SL,

  DCM_VR_SQ,

  DCM_VR_SS,

  DCM_VR_ST,

  DCM_VR_TM,

  DCM_VR_UC,

  DCM_VR_UI,

  DCM_VR_UL,

  DCM_VR_UN,

  DCM_VR_UR,

  DCM_VR_US,

  DCM_VR_UT,

  DCM_VR_INVALID

} dcmvr;


typedef struct DCMITEM {

  FILE *fp;

  fpos_t pos;

  dcmtruid truid;

  DCMTAG tag;

  dcmvr vr;

  unsigned int vl;

  struct DCMITEM *child_item;

  struct DCMITEM *parent_item;

  struct DCMITEM *next_item;

  struct DCMITEM *prev_item;

  char *rd;

} DCMITEM;


typedef struct DCMFILE {

  char filename[FILENAME_MAX];

  FILE *fp;

  dcmtruid truid;

  DCMITEM *item;

} DCMFILE;


typedef struct DCMMATRIX {

  char *filename;

  char acqDate[16];

  char acqTime[16];

  unsigned int frame;

  unsigned int plane;

  double frameStart;

  double frameDur;

} DCMMATRIX;


typedef struct DCMML {

  unsigned int nr;

  unsigned int anr;

  DCMMATRIX *m;

} DCMML;


/*****************************************************************************/


/*****************************************************************************/

/* dcm */

extern int dcmVerifyMagic(const char *filename, FILE *fp);

extern unsigned char dcmVRReserved(dcmvr id);

extern dcmvr dcmVRId(const char *s);

extern char *dcmVRName(dcmvr id);

extern size_t dcmVRVLength(dcmvr id);

extern char *dcmVRDescr(dcmvr id);

extern char *dcmDA2intl(const char *orig, char *intl);

extern char *dcmTM2intl(const char *orig, char *intl);

extern char *dcmDT2intl(const char *orig, char *intl);

extern unsigned int dcmSOPIdentify(const char *s);

extern char *dcmSOPName(unsigned int i);

extern char *dcmSOPUID(unsigned int i);

extern char *dcmSOPUIDName(const char *s);

extern dcmtruid dcmTrUID(const char *s);

extern char *dcmTrUIDDescr(dcmtruid id);

extern char *dcmTrUIDString(dcmtruid id);

extern dcmtruid dcmReadTransferSyntaxUID(FILE *fp);

extern int dcmReadFileTag(FILE *fp, DCMTAG *tag);

extern int dcmWriteFileTag(FILE *fp, DCMTAG *tag);

extern int dcmWriteFileSQDelimItem(FILE *fp);

extern int dcmWriteFileSQItemDelimTag(FILE *fp);

extern dcmvr dcmReadFileVR(FILE *fp, char *vrstr);

extern unsigned int dcmReadFileVL(FILE *fp, unsigned int n);

extern int dcmReadFileVRVL(FILE *fp, dcmvr *vr, unsigned int *vl, unsigned int *n);

extern int dcmWriteFileVRVL(FILE *fp, dcmvr vr, unsigned int vl, unsigned int *n);


extern void dcmfileInit(DCMFILE *d);

extern void dcmitemFree(DCMITEM *d);

extern void dcmfileFree(DCMFILE *d);

extern unsigned short int dcmfileMaxDepth(DCMFILE *df);

extern unsigned short int dcmitemMaxDepth(DCMITEM *d);

extern unsigned short int dcmitemParentNr(DCMITEM *d);

extern char *dcmValueString(DCMITEM *d);

extern long int dcmitemGetInt(DCMITEM *d);

extern double dcmitemGetReal(DCMITEM *d);

extern DCMITEM *dcmFindTag(DCMITEM *d, const short int omit, DCMTAG *tag, const int verbose);

extern void dcmitemPrint(DCMITEM *d);

extern void dcmTagSet(DCMTAG *tag, unsigned short int group, unsigned short int element);

extern int dcmAddItem(

  DCMFILE *dcm, DCMITEM *d, short int aschild, DCMTAG tag, dcmvr vr, unsigned int vl,

  char *rd, const int verbose

);


extern int dcmFileReadNextElement(

  DCMFILE *dcm, DCMITEM *prev_item, DCMITEM *parent_item, const short int sub,

  const short int headerOnly, int verbose

);

extern int dcmFileRead(

  const char *filename, DCMFILE *dcm, const short int headerOnly,

  int verbose

);

extern int dcmFileWrite(const char *filename, DCMFILE *dcm, int verbose);


/*****************************************************************************/


/*****************************************************************************/

#endif // _LIBTPCIMGIO_H

ecat63ReadPlaneToImg
int ecat63ReadPlaneToImg(const char *fname, IMG *img)
Definition img_e63.c:550

ecat63Matenter
int ecat63Matenter(FILE *fp, int matnum, int blkNr)
Definition ecat63ml.c:159

ecat7_is_scaling_needed
int ecat7_is_scaling_needed(float amax, float *data, long long nr)
Definition ecat7w.c:604

pxlMakeRoom
int pxlMakeRoom(IMG_PIXELS *list, long long int i, long long int n)
Definition pixel.c:110

imgMicropetPETToEcat7
int imgMicropetPETToEcat7(FILE *fph, FILE *fpi, char *ecatfile, int verbose)
Definition img_upet.c:85

ecat7PrintNormheader
void ecat7PrintNormheader(ECAT7_normheader *h, FILE *fp)
Definition ecat7p.c:327

ecat7InitMatlist
void ecat7InitMatlist(ECAT7_MATRIXLIST *mlist)
Definition ecat7ml.c:15

ecat7PrintImageheader
void ecat7PrintImageheader(ECAT7_imageheader *h, FILE *fp)
Definition ecat7p.c:102

ecat63rFloat
float ecat63rFloat(void *bufi, int isvax, int islittle)
Definition ecat63r.c:928

ecat7MainheaderFromIFT
int ecat7MainheaderFromIFT(ECAT7_mainheader *h, IFT *ift, int verbose)
Definition ecat7ift.c:221

anaExistsNew
int anaExistsNew(const char *dbname, char *hdrfile, char *imgile, char *siffile)
Definition analyze.c:45

IMG_TEST
int IMG_TEST
Definition img.c:6

imgUnitToEcat6
int imgUnitToEcat6(IMG *img)
Definition imgunits.c:175

imgMatchPlanes
int imgMatchPlanes(IMG *img1, IMG *img2)
Definition imgcomp.c:307

imgWrite2DEcat7
int imgWrite2DEcat7(const char *fname, IMG *img)
Definition img_e7.c:526

ecat63WriteScan
int ecat63WriteScan(FILE *fp, int matnum, ECAT63_scanheader *h, void *data)
Definition ecat63w.c:461

ecat7acquisitiontype
char * ecat7acquisitiontype(short int acquisition_type)
Definition ecat7p.c:468

ecat7SortMatlistByFrame
void ecat7SortMatlistByFrame(ECAT7_MATRIXLIST *ml)
Definition ecat7ml.c:303

anaMakeSIFName
int anaMakeSIFName(const char *dbname, char *siffile)
Definition analyze.c:763

dcmAddItem
int dcmAddItem(DCMFILE *dcm, DCMITEM *d, short int aschild, DCMTAG tag, dcmvr vr, unsigned int vl, char *rd, const int verbose)
Definition dcm.c:1239

anaEditHeader
int anaEditHeader(ANALYZE_DSR *h, char *field, char *value)
Definition analyze.c:783

imgIsotope
char * imgIsotope(IMG *img)
Definition imgdecayc.c:76

ecat63PrintMainheader
void ecat63PrintMainheader(ECAT63_mainheader *h, FILE *fp)
Definition ecat63p.c:16

ecat63_is_scaling_needed
int ecat63_is_scaling_needed(float amax, float *data, long long nr)
Definition ecat63w.c:662

sifModerateTrues
void sifModerateTrues(SIF *sif, double limit)
Definition weight.c:131

imgGetEcat7MHeader
void imgGetEcat7MHeader(IMG *img, ECAT7_mainheader *h)
Definition img_e7.c:742

irdRead
int irdRead(char *irdfile, IMG_RANGE *img_range, char *status)
Definition ird.c:75

ecat7ReadSubheaderToIFT
int ecat7ReadSubheaderToIFT(FILE *fp, ECAT7_mainheader *h, int strtblk, IFT *ift, int verbose)
Definition ecat7ift.c:502

imgWriteEcat7
int imgWriteEcat7(const char *fname, IMG *img)
Definition img_e7.c:382

ecat7pxlbytes
int ecat7pxlbytes(short int data_type)
Definition ecat7r.c:1274

ecat7WriteImageMatrix
int ecat7WriteImageMatrix(FILE *fp, int matrix_id, ECAT7_imageheader *h, float *fdata)
Definition ecat7w.c:635

ecat63ReadMatlist
int ecat63ReadMatlist(FILE *fp, MATRIXLIST *ml, int verbose)
Definition ecat63ml.c:46

imgSetNiftiHeader
int imgSetNiftiHeader(IMG *img, const char *dbname, NIFTI_DSR *dsr, float fmin, float fmax, int verbose)
Definition img_nii.c:471

ecat63errmsg
char ecat63errmsg[128]
Definition ecat63h.c:7

string_to_xyz
int string_to_xyz(char *str, int *x, int *y, int *z)
Definition vol.c:653

imgFormatDetermine
int imgFormatDetermine(const char *fname, char *basename, char *hdrfile, char *imgfile, char *siffile, int *file_format, int *scanner, int *type, int *modality, int verbose)
Definition imgfile.c:536

ecat7MHeaderToIFT
int ecat7MHeaderToIFT(ECAT7_mainheader *h, IFT *ift, int verbose)
Definition ecat7ift.c:85

ecat63GetPlaneAndFrameNr
int ecat63GetPlaneAndFrameNr(MATRIXLIST *mlist, ECAT63_mainheader *h, int *plane_nr, int *frame_nr)
Definition ecat63ml.c:400

ecat7GetPlaneAndFrameNr
int ecat7GetPlaneAndFrameNr(ECAT7_MATRIXLIST *mlist, ECAT7_mainheader *h, int *plane_nr, int *frame_nr)
Definition ecat7ml.c:372

imgSetAnalyzeHeader
int imgSetAnalyzeHeader(IMG *img, const char *dbname, ANALYZE_DSR *h, float fmin, float fmax)
Definition img_ana.c:486

ecat7GetMatrixBlockSize
int ecat7GetMatrixBlockSize(ECAT7_MATRIXLIST *mlist, int *blk_nr)
Definition ecat7ml.c:418

pxlFree
void pxlFree(IMG_PIXELS *pxl)
Definition pixel.c:28

ecat63InitMatlist
void ecat63InitMatlist(MATRIXLIST *mlist)
Definition ecat63ml.c:20

dcmReadTransferSyntaxUID
dcmtruid dcmReadTransferSyntaxUID(FILE *fp)
Definition dcm.c:502

svolInit
void svolInit(SVOL *svol)
Definition vol.c:50

imgGetMicropetMainHeader
int imgGetMicropetMainHeader(FILE *fp, IMG *img, float *calibration_factor, int verbose)
Definition img_upet.c:300

volContents
void volContents(VOL *vol, VOL_RANGE r, FILE *fp)
Definition vol.c:464

ecat63Datatype
char * ecat63Datatype(short int dtype)
Definition ecat63p.c:218

imgRead
int imgRead(const char *fname, IMG *img)
Definition imgfile.c:26

imgGetMaxTime
int imgGetMaxTime(IMG *img, IMG *mimg, const int w, int verbose)
Definition imgminmax.c:345

imgGetMicropetHeader
int imgGetMicropetHeader(IMG *img)
Definition img_upet.c:583

ecat63rInt
int ecat63rInt(void *bufi, int isvax, int islittle)
Definition ecat63r.c:953

ecat63ReadNormheader
int ecat63ReadNormheader(FILE *fp, int blk, ECAT63_normheader *h, int verbose, char *errmsg)
Definition ecat63r.c:483

imgReadEcat7Frame
int imgReadEcat7Frame(const char *fname, int frame_to_read, IMG *img, int frame_index)
Definition img_e7.c:1103

dcmitemGetInt
long int dcmitemGetInt(DCMITEM *d)
Definition dcm.c:1084

dcmitemMaxDepth
unsigned short int dcmitemMaxDepth(DCMITEM *d)
Definition dcm.c:884

dcmVRReserved
unsigned char dcmVRReserved(dcmvr id)
Definition dcm.c:205

ecat63EditMHeader
int ecat63EditMHeader(ECAT63_mainheader *h, char *field, char *value, int verbose)
Definition ecat63h.c:140

ecat7Read2DScanMatrix
int ecat7Read2DScanMatrix(FILE *fp, int first_block, int last_block, ECAT7_2Dscanheader *h, float **fdata)
Definition ecat7r.c:959

imgAvg
int imgAvg(IMG *img, IMG_RANGE *r, float *avg)
Definition imgminmax.c:503

imgExistentTimes
int imgExistentTimes(IMG *img)
Definition img.c:613

dcmSOPIdentify
unsigned int dcmSOPIdentify(const char *s)
Definition dcm.c:367

ecat63EmptyMatlist
void ecat63EmptyMatlist(MATRIXLIST *mlist)
Definition ecat63ml.c:31

fmean
float fmean(float *data, long long int n, float *sd)
Definition imgminmax.c:618

fMinMaxFin
void fMinMaxFin(float *data, long long int n, float *fmin, float *fmax)
Definition imgminmax.c:649

sifModerateWeights
void sifModerateWeights(SIF *sif, double limit)
Definition weight.c:167

sifWrite
int sifWrite(SIF *data, char *filename)
Definition sifio.c:145

dcmWriteFileVRVL
int dcmWriteFileVRVL(FILE *fp, dcmvr vr, unsigned int vl, unsigned int *n)
Definition dcm.c:784

ECAT63_TEST
int ECAT63_TEST
Definition ecat63h.c:6

dcmTrUIDDescr
char * dcmTrUIDDescr(dcmtruid id)
Definition dcm.c:466

ehdrEmpty
void ehdrEmpty(ECAT_HEADERS *ehdr)
Definition ecat7ift.c:47

imgReadMinMax
int imgReadMinMax(const char *fname, float *fmin, float *fmax)
Definition imgminmax.c:211

ecat63WriteImageheader
int ecat63WriteImageheader(FILE *fp, int block, ECAT63_imageheader *h)
Definition ecat63w.c:106

imgInfo
void imgInfo(IMG *image)
Definition img.c:359

ecat7WriteScanMatrix
int ecat7WriteScanMatrix(FILE *fp, int matrix_id, ECAT7_scanheader *h, float *fdata)
Definition ecat7w.c:802

ecat7WriteNormheader
int ecat7WriteNormheader(FILE *fp, int blk, ECAT7_normheader *h)
Definition ecat7w.c:330

imgGetEcat63Fileformat
int imgGetEcat63Fileformat(ECAT63_mainheader *h)
Definition img_e63.c:1288

dcmFileRead
int dcmFileRead(const char *filename, DCMFILE *dcm, const short int headerOnly, int verbose)
Definition dcm.c:1687

vrdReorder
int vrdReorder(VOL_RANGE *vol_range)
Definition vol.c:607

imgSetUnit
int imgSetUnit(IMG *img, char *unit)
Definition imgunits.c:328

ecat63WriteScanMatrix
int ecat63WriteScanMatrix(FILE *fp, int matnum, ECAT63_scanheader *h, float *fdata)
Definition ecat63w.c:781

pxlAllocateMore
int pxlAllocateMore(IMG_PIXELS *pxl, long long int pxlNr)
Definition pixel.c:74

dcmVRVLength
size_t dcmVRVLength(dcmvr id)
Definition dcm.c:264

ecat63ReadAttnMatrix
int ecat63ReadAttnMatrix(FILE *fp, int strtblk, int lastblk, ECAT63_attnheader *h, float **f)
Definition ecat63r.c:830

ecat7ReadScanheader
int ecat7ReadScanheader(FILE *fp, int blk, ECAT7_scanheader *h)
Definition ecat7r.c:536

imgWriteAnalyze
int imgWriteAnalyze(const char *dbname, IMG *img)
Definition img_ana.c:162

niftiWriteHeader
int niftiWriteHeader(char *filename, NIFTI_DSR *dsr, int verbose, char *status)
Definition nifti.c:844

ecat63GatherMatlist
int ecat63GatherMatlist(MATRIXLIST *ml, short int do_planes, short int do_frames, short int do_gates, short int do_beds)
Definition ecat63ml.c:510

ecat7WriteScanheader
int ecat7WriteScanheader(FILE *fp, int blk, ECAT7_scanheader *h)
Definition ecat7w.c:383

ecat63WriteMatdata
int ecat63WriteMatdata(FILE *fp, int strtblk, char *data, long long pxlNr, int pxlSize)
Definition ecat63w.c:618

anaWriteHeader
int anaWriteHeader(char *filename, ANALYZE_DSR *h)
Definition analyze.c:282

ecat63ReadScanheader
int ecat63ReadScanheader(FILE *fp, int blk, ECAT63_scanheader *h, int verbose, char *errmsg)
Definition ecat63r.c:377

imgReadNiftiFirstFrame
int imgReadNiftiFirstFrame(const char *filename, IMG *img, int verbose)
Definition img_nii.c:78

imgEcat63Supported
int imgEcat63Supported(ECAT63_mainheader *h)
Definition img_e63.c:1155

imgFrameMinMax
int imgFrameMinMax(IMG *img, int frame, float *minvalue, float *maxvalue)
Definition imgminmax.c:171

MICROPET_TEST
int MICROPET_TEST
Definition micropet.c:6

ecat63WriteAllImg
int ecat63WriteAllImg(const char *fname, IMG *img)
Definition img_e63.c:335

ecat7rFloat
float ecat7rFloat(void *bufi, int isvax, int islittle)
Definition ecat7r.c:1233

imgGetMicropetFrameHeader
int imgGetMicropetFrameHeader(FILE *fp, IMG *img, int frame_index, int verbose)
Definition img_upet.c:457

imgSS
int imgSS(IMG *img1, IMG *img2, double *ss)
Definition imgcomp.c:412

dcmfileInit
void dcmfileInit(DCMFILE *d)
Definition dcm.c:823

imgReadNiftiHeader
int imgReadNiftiHeader(const char *filename, IMG *img, int verbose)
Definition img_nii.c:134

imgWriteFrame
int imgWriteFrame(const char *fname, int frame_to_write, IMG *img, int frame_index)
Definition imgfile.c:392

dcmTagSet
void dcmTagSet(DCMTAG *tag, unsigned short int group, unsigned short int element)
Definition dcm.c:1221

VOL_TEST
int VOL_TEST
Definition vol.c:6

ecat7WriteImageheader
int ecat7WriteImageheader(FILE *fp, int blk, ECAT7_imageheader *h)
Definition ecat7w.c:113

ecat7ReadPolmapheader
int ecat7ReadPolmapheader(FILE *fp, int blk, ECAT7_polmapheader *h)
Definition ecat7r.c:397

svolAllocate
int svolAllocate(SVOL *svol, int planes, int rows, int columns)
Definition vol.c:204

imgEcat7Supported
int imgEcat7Supported(ECAT7_mainheader *h)
Definition img_e7.c:1036

dcmVRId
dcmvr dcmVRId(const char *s)
Definition dcm.c:223

ecat7ReadMatrixdata
int ecat7ReadMatrixdata(FILE *fp, int start_block, int block_nr, char *data, int dtype)
Definition ecat7r.c:791

ecat7SortMatlistByPlane
void ecat7SortMatlistByPlane(ECAT7_MATRIXLIST *ml)
Definition ecat7ml.c:277

ecat7EditMHeader
int ecat7EditMHeader(ECAT7_mainheader *h, char *field, char *value, int verbose)
Definition ecat7h.c:16

ecat7WriteMatrixdata
int ecat7WriteMatrixdata(FILE *fp, int start_block, char *data, long long pxl_nr, int pxl_size)
Definition ecat7w.c:974

ecat7_id_to_val
void ecat7_id_to_val(int matrix_id, ECAT7_Matval *matval)
Definition ecat7ml.c:262

upetScanStart
int upetScanStart(FILE *fp, time_t *scant)
Definition micropet.c:194

ecat7GetNums
int ecat7GetNums(ECAT7_MATRIXLIST *ml, ECAT7_mainheader *mh, FILE *fp, short int *num_planes, short int *num_frames, short int *num_gates, short int *num_bed_pos)
Definition ecat7ml.c:452

ecat63WriteAttnheader
int ecat63WriteAttnheader(FILE *fp, int block, ECAT63_attnheader *h)
Definition ecat63w.c:190

volInit
void volInit(VOL *vol)
Definition vol.c:26

dcmvr
dcmvr
Definition libtpcimgio.h:2847

DCM_VR_INVALID
@ DCM_VR_INVALID
Invalid DICOM value representation.
Definition libtpcimgio.h:2879

DCM_VR_DT
@ DCM_VR_DT
DICOM date time, max 26 bytes.
Definition libtpcimgio.h:2854

DCM_VR_UI
@ DCM_VR_UI
DICOM unique identifier (UID), max 64 bytes.
Definition libtpcimgio.h:2873

DCM_VR_FD
@ DCM_VR_FD
DICOM floating point double precision, 8 bytes fixed.
Definition libtpcimgio.h:2856

DCM_VR_UC
@ DCM_VR_UC
DICOM unlimited characters.
Definition libtpcimgio.h:2872

DCM_VR_PN
@ DCM_VR_PN
DICOM person name, max 64 chars per component group.
Definition libtpcimgio.h:2865

DCM_VR_CS
@ DCM_VR_CS
DICOM code (control) string, max 16 bytes.
Definition libtpcimgio.h:2851

DCM_VR_SS
@ DCM_VR_SS
DICOM signed short (16-bit integer), 2 bytes fixed.
Definition libtpcimgio.h:2869

DCM_VR_SH
@ DCM_VR_SH
DICOM short string, max 16 chars.
Definition libtpcimgio.h:2866

DCM_VR_OF
@ DCM_VR_OF
DICOM other float (32-bit) stream, endian sensitive.
Definition libtpcimgio.h:2862

DCM_VR_UT
@ DCM_VR_UT
DICOM unlimited text, character string.
Definition libtpcimgio.h:2878

DCM_VR_US
@ DCM_VR_US
DICOM unsigned short (16-bit) integer, 2 bytes fixed.
Definition libtpcimgio.h:2877

DCM_VR_TM
@ DCM_VR_TM
DICOM time HHMMSS.FFFFFF, max 14 bytes.
Definition libtpcimgio.h:2871

DCM_VR_OB
@ DCM_VR_OB
DICOM other byte string, even bytes, endian insensitive.
Definition libtpcimgio.h:2860

DCM_VR_AS
@ DCM_VR_AS
DICOM age string, 4 bytes fixed.
Definition libtpcimgio.h:2849

DCM_VR_ST
@ DCM_VR_ST
DICOM short text, max 1024 chars.
Definition libtpcimgio.h:2870

DCM_VR_AT
@ DCM_VR_AT
DICOM attribute tag, 4 bytes fixed.
Definition libtpcimgio.h:2850

DCM_VR_LT
@ DCM_VR_LT
DICOM long text, max 10240 chars.
Definition libtpcimgio.h:2859

DCM_VR_DA
@ DCM_VR_DA
DICOM date in format YYYYMMDD, 8 bytes fixed.
Definition libtpcimgio.h:2852

DCM_VR_UL
@ DCM_VR_UL
DICOM unsigned long (32-bit) integer, 4 bytes fixed.
Definition libtpcimgio.h:2874

DCM_VR_UN
@ DCM_VR_UN
DICOM unknown, any valid length of another VR.
Definition libtpcimgio.h:2875

DCM_VR_DS
@ DCM_VR_DS
DICOM decimal string, max 16 bytes.
Definition libtpcimgio.h:2853

DCM_VR_OW
@ DCM_VR_OW
DICOM other word (16-bit) stream, even bytes, endian sensitive.
Definition libtpcimgio.h:2864

DCM_VR_IS
@ DCM_VR_IS
DICOM integer string, max 12 bytes.
Definition libtpcimgio.h:2857

DCM_VR_AE
@ DCM_VR_AE
DICOM application entity, max 16 bytes.
Definition libtpcimgio.h:2848

DCM_VR_UR
@ DCM_VR_UR
DICOM URI or URL, string of characters.
Definition libtpcimgio.h:2876

DCM_VR_LO
@ DCM_VR_LO
DICOM long string, max 64 chars.
Definition libtpcimgio.h:2858

DCM_VR_SQ
@ DCM_VR_SQ
DICOM sequence of zero or more elements (used for nested data).
Definition libtpcimgio.h:2868

DCM_VR_FL
@ DCM_VR_FL
DICOM floating point single precision, 4 bytes fixed.
Definition libtpcimgio.h:2855

DCM_VR_SL
@ DCM_VR_SL
DICOM signed long (32-bit integer), 4 bytes fixed.
Definition libtpcimgio.h:2867

DCM_VR_OL
@ DCM_VR_OL
DICOM other long (32-bit) stream, endian sensitive.
Definition libtpcimgio.h:2863

DCM_VR_OD
@ DCM_VR_OD
DICOM other double (64-bit) stream, endian sensitive.
Definition libtpcimgio.h:2861

niftiCreateFNames
int niftiCreateFNames(const char *filename, char *hdrfile, char *imgfile, char *siffile, int fileformat)
Definition nifti.c:44

ecat63wFloat
void ecat63wFloat(float *bufi, void *bufo, int tovax, int islittle)
Definition ecat63w.c:860

imgReadNifti
int imgReadNifti(const char *filename, IMG *img, int verbose)
Definition img_nii.c:23

ecat7ReadNormheader
int ecat7ReadNormheader(FILE *fp, int blk, ECAT7_normheader *h)
Definition ecat7r.c:472

ecat7filetype
char * ecat7filetype(short int file_type)
Definition ecat7p.c:447

dcmFindTag
DCMITEM * dcmFindTag(DCMITEM *d, const short int omit, DCMTAG *tag, const int verbose)
Definition dcm.c:1163

dcmFileWrite
int dcmFileWrite(const char *filename, DCMFILE *dcm, int verbose)
Definition dcm.c:1758

anaFlipping
int anaFlipping()
Definition analyze.c:635

ecat7ReadMatlist
int ecat7ReadMatlist(FILE *fp, ECAT7_MATRIXLIST *ml, int verbose)
Definition ecat7ml.c:41

imgNaNs
unsigned long long imgNaNs(IMG *img, int fix)
Definition img.c:658

ecat7EmptyMatlist
void ecat7EmptyMatlist(ECAT7_MATRIXLIST *mlist)
Definition ecat7ml.c:26

imgReadNiftiFrame
int imgReadNiftiFrame(const char *filename, int frame_to_read, IMG *img, int frame_index, int verbose)
Definition img_nii.c:311

dcmDT2intl
char * dcmDT2intl(const char *orig, char *intl)
Definition dcm.c:345

svolEmpty
void svolEmpty(SVOL *svol)
Definition vol.c:103

imgReadEcat7FirstFrame
int imgReadEcat7FirstFrame(const char *fname, IMG *img)
Definition img_e7.c:1060

imgUnit
char * imgUnit(int dunit)
Definition imgunits.c:315

imgExtractRange
int imgExtractRange(IMG *img1, IMG_RANGE r, IMG *img2)
Definition img.c:548

imgReadMicropetFirstFrame
int imgReadMicropetFirstFrame(const char *fname, IMG *img)
Definition img_upet.c:925

imgMatchMatrixSize
int imgMatchMatrixSize(IMG *img1, IMG *img2)
Definition imgcomp.c:447

anaPrintHeader
int anaPrintHeader(ANALYZE_DSR *h, FILE *fp)
Definition analyze.c:380

niftiRemoveFNameExtension
void niftiRemoveFNameExtension(char *fname)
Definition nifti.c:23

imgMicropetCTToEcat7
int imgMicropetCTToEcat7(FILE *fph, FILE *fpi, char *ecatfile, int verbose)
Definition img_upet.c:196

pxlGet
int pxlGet(IMG_PIXELS *list, long long int i, IMG_PIXEL *pxl)
Definition pixel.c:163

imgSetEcat63SHeader
void imgSetEcat63SHeader(IMG *img, void *h)
Definition img_e63.c:1872

ecat63PrintImageheader
void ecat63PrintImageheader(ECAT63_imageheader *h, FILE *fp)
Definition ecat63p.c:94

ecat7WritePolarmapMatrix
int ecat7WritePolarmapMatrix(FILE *fp, int matrix_id, ECAT7_polmapheader *h, float *fdata)
Definition ecat7w.c:888

ecat63WriteScanheader
int ecat63WriteScanheader(FILE *fp, int block, ECAT63_scanheader *h)
Definition ecat63w.c:242

ecat7ReadAttenheader
int ecat7ReadAttenheader(FILE *fp, int blk, ECAT7_attenheader *h)
Definition ecat7r.c:311

sifInit
void sifInit(SIF *data)
Definition sif.c:17

ecat7rInt
int ecat7rInt(void *bufi, int isvax, int islittle)
Definition ecat7r.c:1256

niftiPrintHeader
int niftiPrintHeader(NIFTI_DSR *h, FILE *fp)
Definition nifti.c:501

volMax
int volMax(VOL *vol, VOL_RANGE *r, VOL_PIXEL *maxp, float *maxv, VOL_PIXEL *minp, float *minv)
Definition vol.c:492

ecat7WriteHeaders
int ecat7WriteHeaders(const char *fname, ECAT_HEADERS *ehdr, int verbose)
Definition ecat7ift.c:755

ecat7errmsg
char ecat7errmsg[128]
Definition ecat7h.c:7

ecat63PrintScanheader
void ecat63PrintScanheader(ECAT63_scanheader *h, FILE *fp)
Definition ecat63p.c:137

dcmfileFree
void dcmfileFree(DCMFILE *d)
Definition dcm.c:868

niftiReadImagedata
int niftiReadImagedata(FILE *fp, NIFTI_DSR *h, int frame, float *data, int verbose, char *status)
Definition nifti.c:619

imgReadFrame
int imgReadFrame(const char *fname, int frame_to_read, IMG *img, int frame_index)
Definition imgfile.c:269

ecat63PrintNormheader
void ecat63PrintNormheader(ECAT63_normheader *h, FILE *fp)
Definition ecat63p.c:197

dcmDA2intl
char * dcmDA2intl(const char *orig, char *intl)
Definition dcm.c:299

anaDatabaseExists
int anaDatabaseExists(const char *dbname, char *hdrfile, char *imgfile, char *siffile)
Definition analyze.c:704

dcmitemFree
void dcmitemFree(DCMITEM *d)
Definition dcm.c:840

imgWriteNiftiFrame
int imgWriteNiftiFrame(const char *dbname, int frame_to_write, IMG *img, int frame_index, float fmin, float fmax, int verbose)
Definition img_nii.c:594

dcmTM2intl
char * dcmTM2intl(const char *orig, char *intl)
Definition dcm.c:322

dcmVRName
char * dcmVRName(dcmvr id)
Definition dcm.c:246

imgRangeMinMax
int imgRangeMinMax(IMG *img, IMG_RANGE *r, IMG_PIXEL *maxp, float *maxv, IMG_PIXEL *minp, float *minv)
Definition imgminmax.c:71

dcmReadFileVR
dcmvr dcmReadFileVR(FILE *fp, char *vrstr)
Definition dcm.c:655

imgUnitId
int imgUnitId(char *unit)
Definition imgunits.c:14

imgWriteEcat63Frame
int imgWriteEcat63Frame(const char *fname, int frame_to_write, IMG *img, int frame_index)
Definition img_e63.c:1711

mat_numcod
int mat_numcod(int frame, int plane, int gate, int data, int bed)
Definition ecat63ml.c:242

ematEmpty
void ematEmpty(ECAT_MATRIX *emat)
Definition ecat7ift.c:33

irdReorder
int irdReorder(IMG_RANGE *img_range)
Definition ird.c:44

SIF_TEST
int SIF_TEST
Definition sif.c:6

anaRemoveFNameExtension
void anaRemoveFNameExtension(char *fname)
Definition analyze.c:687

ecat7PrintPolmapheader
void ecat7PrintPolmapheader(ECAT7_polmapheader *h, FILE *fp)
Definition ecat7p.c:276

upetGetImageDimensions
int upetGetImageDimensions(FILE *fp, int *z, int *x, int *y, int *f)
Definition micropet.c:154

ecat7ReadMainheader
int ecat7ReadMainheader(FILE *fp, ECAT7_mainheader *h)
Definition ecat7r.c:15

imgReadEcat7
int imgReadEcat7(const char *fname, IMG *img)
Definition img_e7.c:19

svol2img
int svol2img(SVOL *svol, IMG *img, int frame)
Definition vol.c:385

ecat63ReadMatdata
int ecat63ReadMatdata(FILE *fp, int strtblk, int blkNr, char *data, int dtype)
Definition ecat63r.c:568

imgMatchMatrix
int imgMatchMatrix(IMG *img1, IMG *img2, double accuracy)
Definition imgcomp.c:47

imgReadEcat7Header
int imgReadEcat7Header(const char *fname, IMG *img)
Definition img_e7.c:860

imgReadEcat63FirstFrame
int imgReadEcat63FirstFrame(const char *fname, IMG *img)
Definition img_e63.c:1457

ANALYZE_TEST
int ANALYZE_TEST
Definition analyze.c:8

volAllocate
int volAllocate(VOL *vol, int planes, int rows, int columns)
Definition vol.c:139

dcmitemPrint
void dcmitemPrint(DCMITEM *d)
Definition dcm.c:1205

imgGetAnalyzeHeader
int imgGetAnalyzeHeader(IMG *img, ANALYZE_DSR *h)
Definition img_ana.c:427

ecat63WriteAttn
int ecat63WriteAttn(FILE *fp, int matnum, ECAT63_attnheader *h, void *data)
Definition ecat63w.c:563

imgExistentCounts
int imgExistentCounts(IMG *img)
Definition img.c:630

upetIsHeader
int upetIsHeader(char *hdrfile)
Definition micropet.c:55

ecat63WriteNorm
int ecat63WriteNorm(FILE *fp, int matnum, ECAT63_normheader *h, void *data)
Definition ecat63w.c:512

float2parts
void float2parts(float *buf)
Definition ecat63p.c:277

ecat63GetNums
int ecat63GetNums(MATRIXLIST *ml, short int *num_planes, short int *num_frames, short int *num_gates, short int *num_bed_pos)
Definition ecat63ml.c:450

ecat63GetMatrixBlockSize
int ecat63GetMatrixBlockSize(MATRIXLIST *mlist, int *blk_nr)
Definition ecat63ml.c:366

sifWeightByFrames
void sifWeightByFrames(SIF *data, double halflife)
Calculate weights for frames in SIF data based on frame lengths. Weights are normalized to have an av...
Definition weight.c:72

dcmReadFileTag
int dcmReadFileTag(FILE *fp, DCMTAG *tag)
Definition dcm.c:553

imgReadAnalyzeFirstFrame
int imgReadAnalyzeFirstFrame(const char *fname, IMG *img)
Definition img_ana.c:592

imgAbsMax
int imgAbsMax(IMG *img, float *maxvalue)
Definition imgminmax.c:44

ecat7EditSHeader
int ecat7EditSHeader(ECAT7_scanheader *h, char *field, char *value, int verbose)
Definition ecat7h.c:199

niftiExists
int niftiExists(const char *dbname, char *hdrfile, char *imgile, char *siffile, NIFTI_DSR *header, int verbose, char *status)
Definition nifti.c:160

imgBranchingCorrection
int imgBranchingCorrection(IMG *image, int mode, int verbose, char *status)
Definition imgdecayc.c:132

imgStatus
char * imgStatus(int status_index)
Definition img.c:330

dcmitemGetReal
double dcmitemGetReal(DCMITEM *d)
Definition dcm.c:1120

sifPrint
void sifPrint(SIF *data)
Definition sifio.c:234

dcmReadFileVRVL
int dcmReadFileVRVL(FILE *fp, dcmvr *vr, unsigned int *vl, unsigned int *n)
Definition dcm.c:724

ecat7EnterMatrix
int ecat7EnterMatrix(FILE *fp, int matrix_id, int block_nr)
Definition ecat7ml.c:147

imgMatchHeader
int imgMatchHeader(IMG *img1, IMG *img2)
Definition imgcomp.c:128

imgDecayCorrection
int imgDecayCorrection(IMG *img, int mode)
Definition imgdecayc.c:16

ecat63WriteImageMatrix
int ecat63WriteImageMatrix(FILE *fp, int matnum, ECAT63_imageheader *h, float *fdata)
Definition ecat63w.c:697

dcmSOPUIDName
char * dcmSOPUIDName(const char *s)
Definition dcm.c:424

sifExistentCounts
int sifExistentCounts(SIF *sif)
Definition weight.c:207

imgWriteNifti
int imgWriteNifti(const char *dbname, IMG *img, int save_sif, int verbose)
Definition img_nii.c:811

imgReadMicropetFrame
int imgReadMicropetFrame(const char *fname, int frame_to_read, IMG *img, int frame_index)
Definition img_upet.c:819

anaExists
int anaExists(const char *dbname)
Definition analyze.c:20

imgMinMax
int imgMinMax(IMG *img, float *minvalue, float *maxvalue)
Definition imgminmax.c:154

imgMatchTransform
int imgMatchTransform(IMG *img1, IMG *img2)
Definition imgcomp.c:85

imgUnitFromEcat
void imgUnitFromEcat(IMG *img, int ecat_unit)
Definition imgunits.c:95

imgGetEcat7Fileformat
int imgGetEcat7Fileformat(ECAT7_mainheader *h)
Definition img_e7.c:827

imgAllocate
int imgAllocate(IMG *image, int planes, int rows, int columns, int frames)
Definition img.c:194

upetHeaderReadParameter
int upetHeaderReadParameter(FILE *fp, char *parameter, char *value)
Definition micropet.c:16

ecat63DeleteLateFrames
int ecat63DeleteLateFrames(MATRIXLIST *ml, int frame_nr)
Definition ecat63ml.c:342

ecat7datatype
char * ecat7datatype(short int data_type)
Definition ecat7p.c:489

ecat7WritePolmapheader
int ecat7WritePolmapheader(FILE *fp, int blk, ECAT7_polmapheader *h)
Definition ecat7w.c:271

irdCheck
int irdCheck(IMG_RANGE *r, IMG *img)
Definition ird.c:152

ecat7ReadPolarmapMatrix
int ecat7ReadPolarmapMatrix(FILE *fp, int first_block, int last_block, ECAT7_polmapheader *h, float **fdata)
Definition ecat7r.c:1154

ecat7PrintAttenheader
void ecat7PrintAttenheader(ECAT7_attenheader *h, FILE *fp)
Definition ecat7p.c:230

upetExists
int upetExists(const char *upetname, char *hdrfile, char *imgfile, int verbose)
Definition micropet.c:86

ecat63SortMatlistByPlane
void ecat63SortMatlistByPlane(MATRIXLIST *ml)
Definition ecat63ml.c:271

ecat7Write2DScanheader
int ecat7Write2DScanheader(FILE *fp, int blk, ECAT7_2Dscanheader *h)
Definition ecat7w.c:450

dcmFileReadNextElement
int dcmFileReadNextElement(DCMFILE *dcm, DCMITEM *prev_item, DCMITEM *parent_item, const short int sub, const short int headerOnly, int verbose)
Definition dcm.c:1370

ecat7Read2DScanheader
int ecat7Read2DScanheader(FILE *fp, int blk, ECAT7_2Dscanheader *h)
Definition ecat7r.c:631

ecat63ScanstarttimeInt
char * ecat63ScanstarttimeInt(const ECAT63_mainheader *h, char *buf)
Convert scan_start_time in ECAT 6.3 main header into a null-terminated string of the form YYYY-MM-DD ...
Definition ecat63p.c:391

dcmWriteFileSQItemDelimTag
int dcmWriteFileSQItemDelimTag(FILE *fp)
Definition dcm.c:634

ecat7ScanheaderToIFT
int ecat7ScanheaderToIFT(ECAT7_scanheader *h, IFT *ift, int verbose)
Definition ecat7ift.c:408

imgWriteEcat7Frame
int imgWriteEcat7Frame(const char *fname, int frame_to_write, IMG *img, int frame_index)
Definition img_e7.c:1295

niftiReadHeader
int niftiReadHeader(char *filename, NIFTI_DSR *h, int verbose, char *status)
Definition nifti.c:293

ecat63AddImg
int ecat63AddImg(const char *fname, IMG *img)
Definition img_e63.c:878

volInfo
void volInfo(VOL *vol, FILE *fp)
Definition vol.c:415

imgWriteAnalyzeFrame
int imgWriteAnalyzeFrame(const char *fname, int frame_to_write, IMG *img, int frame_index, float fmin, float fmax)
Definition img_ana.c:751

sifWeight
void sifWeight(SIF *data, double halflife)
Calculate weights for frames in SIF data based on true counts. Weights are normalized to have an aver...
Definition weight.c:28

interfile_read
int interfile_read(char headerName[256], char searchWord[256], char returnValue[256], char errorMessage[300])
Definition interfile.c:43

anaReadHeader
int anaReadHeader(char *filename, ANALYZE_DSR *h)
Definition analyze.c:131

string_to_xyzf
int string_to_xyzf(const char *str, IMG_PIXEL *v)
Definition ird.c:14

ecat63ReadImageMatrix
int ecat63ReadImageMatrix(FILE *fp, int strtblk, int lastblk, ECAT63_imageheader *h, float **f)
Definition ecat63r.c:627

ecat7Write2DScanMatrix
int ecat7Write2DScanMatrix(FILE *fp, int matrix_id, ECAT7_2Dscanheader *h, float *fdata)
Definition ecat7w.c:719

ecat7Print2DScanheader
void ecat7Print2DScanheader(ECAT7_2Dscanheader *h, FILE *fp)
Definition ecat7p.c:364

ecat63PrintMatlist
void ecat63PrintMatlist(MATRIXLIST *ml)
Definition ecat63ml.c:130

imgWritePolarmap
int imgWritePolarmap(const char *fname, IMG *img)
Definition img_e7.c:661

vrdVxlNr
int vrdVxlNr(VOL_RANGE *vol_range)
Definition vol.c:634

ecat7Write2DNormheader
int ecat7Write2DNormheader(FILE *fp, int blk, ECAT7_2Dnormheader *h)
Definition ecat7w.c:517

imgSetDecayCorrFactors
int imgSetDecayCorrFactors(IMG *image, int mode)
Definition imgdecayc.c:87

ecat7Create
FILE * ecat7Create(const char *fname, ECAT7_mainheader *h)
Definition ecat7w.c:567

ecat63WriteNormheader
int ecat63WriteNormheader(FILE *fp, int block, ECAT63_normheader *h)
Definition ecat63w.c:313

imgGetMaxFrame
int imgGetMaxFrame(IMG *img, IMG *mimg, int verbose)
Definition imgminmax.c:454

interfileExists
int interfileExists(const char *fname, char *hdrfile, char *imgfile, int verbose)
Definition interfile.c:193

pxlAdd
int pxlAdd(IMG_PIXELS *list, IMG_PIXEL *pxl)
Definition pixel.c:139

volEmpty
void volEmpty(VOL *vol)
Definition vol.c:74

imgGetPeak
int imgGetPeak(IMG *img, float beforeTime, IMG_PIXEL *p, int verbose)
Definition imgminmax.c:294

imgGetNiftiHeader
int imgGetNiftiHeader(IMG *img, NIFTI_DSR *h, int verbose)
Definition img_nii.c:218

pxlWrite
int pxlWrite(IMG_PIXELS *pxl, FILE *fp, char *status)
Definition pixel.c:299

svolInfo
void svolInfo(SVOL *svol, FILE *fp)
Definition vol.c:439

dcmfileMaxDepth
unsigned short int dcmfileMaxDepth(DCMFILE *df)
Definition dcm.c:903

ecat63WriteImage
int ecat63WriteImage(FILE *fp, int matnum, ECAT63_imageheader *h, void *data)
Definition ecat63w.c:410

imgMaxDifference
int imgMaxDifference(IMG *img1, IMG *img2, VOXEL_4D *absdiff, float *abs_max, VOXEL_4D *reldiff, float *rel_max)
Definition imgcomp.c:328

ecat7WriteAttenheader
int ecat7WriteAttenheader(FILE *fp, int blk, ECAT7_attenheader *h)
Definition ecat7w.c:208

img2vol
int img2vol(IMG *img, VOL *vol, int frame)
Definition vol.c:267

ecat63Create
FILE * ecat63Create(const char *fname, ECAT63_mainheader *h)
Definition ecat63w.c:365

pxlRead
int pxlRead(IMG_PIXELS *pxl, const char *fname, char *status)
Definition pixel.c:331

ehdrInitiate
void ehdrInitiate(ECAT_HEADERS *ehdr)
Definition ecat7ift.c:21

f_kth_smallest
float f_kth_smallest(float *data, long long int n, long long int k)
Definition imgminmax.c:558

dcmReadFileVL
unsigned int dcmReadFileVL(FILE *fp, unsigned int n)
Definition dcm.c:692

img2svol
int img2svol(IMG *img, SVOL *svol, int frame)
Definition vol.c:305

dcmTrUIDString
char * dcmTrUIDString(dcmtruid id)
Definition dcm.c:484

imgCopyhdr
int imgCopyhdr(IMG *image1, IMG *image2)
Definition img.c:471

imgFormatFromFName
void imgFormatFromFName(IMG *img, const char *fname)
Definition imgfile.c:483

imgMatchFrames
int imgMatchFrames(IMG *img1, IMG *img2)
Definition imgcomp.c:286

anaReadImagedata
int anaReadImagedata(FILE *fp, ANALYZE_DSR *h, int frame, float *data)
Definition analyze.c:454

volAvg
int volAvg(VOL *vol, VOL_RANGE *r, float *avg)
Definition vol.c:562

ematInitiate
void ematInitiate(ECAT_MATRIX *emat)
Definition ecat7ift.c:12

ecat63PrintAttnheader
void ecat63PrintAttnheader(ECAT63_attnheader *h, FILE *fp)
Definition ecat63p.c:173

ecat63Unit
char * ecat63Unit(short int dunit)
Definition ecat63p.c:243

sifSetmem
int sifSetmem(SIF *data, int frameNr)
Definition sif.c:56

ecat7PrintMainheader
void ecat7PrintMainheader(ECAT7_mainheader *h, FILE *fp)
Definition ecat7p.c:16

pxlRmDuplicates
long long int pxlRmDuplicates(IMG_PIXELS *list)
Definition pixel.c:273

ecat63wInt
void ecat63wInt(int *bufi, void *bufo, int tovax, int islittle)
Definition ecat63w.c:884

ecat7ReadImageMatrix
int ecat7ReadImageMatrix(FILE *fp, int first_block, int last_block, ECAT7_imageheader *h, float **fdata)
Definition ecat7r.c:858

imgMax
int imgMax(IMG *img, float *maxvalue)
Definition imgminmax.c:15

imgMatch
int imgMatch(IMG *img1, IMG *img2, float accuracy)
Definition imgcomp.c:15

upetReadImagedata
int upetReadImagedata(FILE *fp, IFT *ift, int frame, float *data)
Definition micropet.c:243

imgAllocateWithHeader
int imgAllocateWithHeader(IMG *image, int planes, int rows, int columns, int frames, IMG *image_from)
Definition img.c:279

ecat7ReadImageheader
int ecat7ReadImageheader(FILE *fp, int blk, ECAT7_imageheader *h)
Definition ecat7r.c:162

imgReadAnalyzeFrame
int imgReadAnalyzeFrame(const char *dbname, int frame_to_read, IMG *img, int frame_index)
Definition img_ana.c:639

imgReadAnalyzeHeader
int imgReadAnalyzeHeader(const char *dbname, IMG *img)
Definition img_ana.c:360

vrd2vol
int vrd2vol(VOL_RANGE *r, VOL *vol, float in, float out, char *status)
Definition vol.c:681

ecat7_val_to_id
int ecat7_val_to_id(int frame, int plane, int gate, int data, int bed)
Definition ecat7ml.c:245

MAX_POLARMAP_NUM_RINGS
#define MAX_POLARMAP_NUM_RINGS
Definition libtpcimgio.h:1586

anaRemove
int anaRemove(const char *dbname)
Definition analyze.c:666

dcmitemParentNr
unsigned short int dcmitemParentNr(DCMITEM *d)
Definition dcm.c:923

imgMicropetToEcat7
int imgMicropetToEcat7(char *upetname, char *ecatfile, int verbose)
Definition img_upet.c:15

ecat7PrintSubheader
int ecat7PrintSubheader(ECAT7_mainheader mh, FILE *fp, int plane, int frame, FILE *ofp)
Definition ecat7p.c:506

imgGetMicropetSIF
int imgGetMicropetSIF(FILE *fp, SIF *sif)
Definition img_upet.c:517

ecat7ReadHeaders
int ecat7ReadHeaders(const char *fname, ECAT_HEADERS *ehdr, int verbose)
Definition ecat7ift.c:687

ecat6PrintSubheader
int ecat6PrintSubheader(ECAT63_mainheader mh, FILE *fp, int plane, int frame, FILE *ofp)
Definition ecat63p.c:293

ecat7GatherMatlist
int ecat7GatherMatlist(ECAT7_MATRIXLIST *ml, short int do_planes, short int do_frames, short int do_gates, short int do_beds)
Definition ecat7ml.c:535

dcmtruid
dcmtruid
Definition libtpcimgio.h:2818

DCM_TRUID_LEI
@ DCM_TRUID_LEI
Little Endian Implicit VR (DICOM default)
Definition libtpcimgio.h:2820

DCM_TRUID_JPEG81
@ DCM_TRUID_JPEG81
Lossy JPEG-LS.
Definition libtpcimgio.h:2827

DCM_TRUID_JPEG93
@ DCM_TRUID_JPEG93
Multicomponent JPEG 2000.
Definition libtpcimgio.h:2831

DCM_TRUID_MPEG100
@ DCM_TRUID_MPEG100
MPEG-2.
Definition libtpcimgio.h:2832

DCM_TRUID_JPEG92
@ DCM_TRUID_JPEG92
Lossless multicomponent JPEG 2000.
Definition libtpcimgio.h:2830

DCM_TRUID_JPEG91
@ DCM_TRUID_JPEG91
JPEG 2000.
Definition libtpcimgio.h:2829

DCM_TRUID_JPEG70
@ DCM_TRUID_JPEG70
Lossless JPEG.
Definition libtpcimgio.h:2825

DCM_TRUID_XML
@ DCM_TRUID_XML
XML encoding.
Definition libtpcimgio.h:2837

DCM_TRUID_INVALID
@ DCM_TRUID_INVALID
Invalid Transfer Syntax UID.
Definition libtpcimgio.h:2838

DCM_TRUID_MPEG103
@ DCM_TRUID_MPEG103
MPEG-4 BD-compatible.
Definition libtpcimgio.h:2834

DCM_TRUID_RFC
@ DCM_TRUID_RFC
RFC 2557.
Definition libtpcimgio.h:2836

DCM_TRUID_JPEG80
@ DCM_TRUID_JPEG80
Lossless JPEG-LS.
Definition libtpcimgio.h:2826

DCM_TRUID_UNKNOWN
@ DCM_TRUID_UNKNOWN
Unknown Transfer Syntax UID
Definition libtpcimgio.h:2819

DCM_TRUID_BEE
@ DCM_TRUID_BEE
Big Endian Explicit VR.
Definition libtpcimgio.h:2822

DCM_TRUID_JPEG51
@ DCM_TRUID_JPEG51
Lossy JPEG 12-bit compression.
Definition libtpcimgio.h:2824

DCM_TRUID_RLE
@ DCM_TRUID_RLE
Lossless RLE.
Definition libtpcimgio.h:2835

DCM_TRUID_LEE
@ DCM_TRUID_LEE
Little Endian Explicit VR.
Definition libtpcimgio.h:2821

DCM_TRUID_JPEG90
@ DCM_TRUID_JPEG90
Lossless JPEG 2000.
Definition libtpcimgio.h:2828

DCM_TRUID_JPEG50
@ DCM_TRUID_JPEG50
Lossy JPEG 8-bit compression.
Definition libtpcimgio.h:2823

DCM_TRUID_MPEG102
@ DCM_TRUID_MPEG102
MPEG-4.
Definition libtpcimgio.h:2833

imgUnitToEcat7
void imgUnitToEcat7(IMG *img, ECAT7_mainheader *h)
Definition imgunits.c:209

dcmValueString
char * dcmValueString(DCMITEM *d)
Definition dcm.c:942

imgSetStatus
void imgSetStatus(IMG *img, int status_index)
Definition img.c:345

ecat63CheckMatlist
int ecat63CheckMatlist(MATRIXLIST *ml)
Definition ecat63ml.c:324

imgGetEcat63MHeader
void imgGetEcat63MHeader(IMG *img, ECAT63_mainheader *h)
Definition img_e63.c:1172

imgDup
int imgDup(IMG *img1, IMG *img2)
Definition img.c:304

imgReadMicropetHeader
int imgReadMicropetHeader(const char *dbname, IMG *img)
Definition img_upet.c:767

sifEmpty
void sifEmpty(SIF *data)
Definition sif.c:33

imgReadEcat63Header
int imgReadEcat63Header(const char *fname, IMG *img)
Definition img_e63.c:1318

vrdRead
int vrdRead(char *vdffile, VOL_RANGE *vol_range, char *status)
Definition vol.c:742

ecat63ReadAttnheader
int ecat63ReadAttnheader(FILE *fp, int blk, ECAT63_attnheader *h, int verbose, char *errmsg)
Definition ecat63r.c:296

ecat7PrintMatlist
void ecat7PrintMatlist(ECAT7_MATRIXLIST *ml)
Definition ecat7ml.c:112

pxlInit
void pxlInit(IMG_PIXELS *pxl)
Definition pixel.c:14

pxlMove
void pxlMove(IMG_PIXELS *list, long long int from, long long int to)
Definition pixel.c:220

ecat63ReadImageheader
int ecat63ReadImageheader(FILE *fp, int blk, ECAT63_imageheader *h, int verbose, char *errmsg)
Definition ecat63r.c:187

imgWrite
int imgWrite(const char *fname, IMG *img)
Definition imgfile.c:136

ecat63CopyMainheader
int ecat63CopyMainheader(ECAT63_mainheader *h1, ECAT63_mainheader *h2)
Definition ecat63h.c:16

niftiRemove
int niftiRemove(const char *dbname, int fileformat, int verbose)
Definition nifti.c:100

dcmVRDescr
char * dcmVRDescr(dcmvr id)
Definition dcm.c:282

ecat7Read2DNormheader
int ecat7Read2DNormheader(FILE *fp, int blk, ECAT7_2Dnormheader *h)
Definition ecat7r.c:725

imgEmpty
void imgEmpty(IMG *image)
Definition img.c:121

ecat7DeleteLateFrames
int ecat7DeleteLateFrames(ECAT7_MATRIXLIST *ml, int frame_nr)
Definition ecat7ml.c:346

sifWeightNorm
void sifWeightNorm(SIF *data)
Definition weight.c:105

img2sif
int img2sif(IMG *img, SIF *sif, int copy_header, int copy_frames, int copy_counts, int verbose)
Definition img_sif.c:71

ecat7PrintScanheader
void ecat7PrintScanheader(ECAT7_scanheader *h, FILE *fp)
Definition ecat7p.c:181

ecat7EditVHeader
int ecat7EditVHeader(ECAT7_imageheader *h, char *field, char *value, int verbose)
Definition ecat7h.c:320

ehdrAllocate
int ehdrAllocate(ECAT_HEADERS *ehdr, int nr)
Definition ecat7ift.c:63

imgSetEcat7MHeader
void imgSetEcat7MHeader(IMG *img, ECAT7_mainheader *h)
Definition img_e7.c:781

ecat63CopyScanheader
int ecat63CopyScanheader(ECAT63_scanheader *h1, ECAT63_scanheader *h2)
Definition ecat63h.c:94

imgSmoothMax
int imgSmoothMax(IMG *img, float *maxvalue, IMG_PIXEL *p)
Definition imgminmax.c:248

dcmSOPUID
char * dcmSOPUID(unsigned int i)
Definition dcm.c:406

ecat7CheckMatlist
int ecat7CheckMatlist(ECAT7_MATRIXLIST *ml)
Definition ecat7ml.c:329

ecat63ScanstarttimeToTm
struct tm * ecat63ScanstarttimeToTm(const ECAT63_mainheader *h, struct tm *tm)
Convert scan_start_time in ECAT 6.3 main header into a struct tm.
Definition ecat63w.c:900

interfileIsHeader
int interfileIsHeader(const char *hdrfile, char *imgfile)
Definition interfile.c:154

ecat7WriteMainheader
int ecat7WriteMainheader(FILE *fp, ECAT7_mainheader *h)
Definition ecat7w.c:16

dcmTrUID
dcmtruid dcmTrUID(const char *s)
Definition dcm.c:445

sifRead
int sifRead(char *filename, SIF *data)
Definition sifio.c:21

ecat63ReadScanMatrix
int ecat63ReadScanMatrix(FILE *fp, int strtblk, int lastblk, ECAT63_scanheader *h, float **f)
Definition ecat63r.c:731

imgReadMicropet
int imgReadMicropet(const char *fname, IMG *img)
Definition img_upet.c:971

vol2img
int vol2img(VOL *vol, IMG *img, int frame)
Definition vol.c:351

imgSetEcat7SHeader
void imgSetEcat7SHeader(IMG *img, void *h)
Definition img_e7.c:1482

pxlAllocate
int pxlAllocate(IMG_PIXELS *pxl, long long int pxlNr)
Definition pixel.c:44

dcmWriteFileTag
int dcmWriteFileTag(FILE *fp, DCMTAG *tag)
Definition dcm.c:583

imgSetEcat63MHeader
void imgSetEcat63MHeader(IMG *img, ECAT63_mainheader *h)
Definition img_e63.c:1223

siferrmsg
char siferrmsg[128]
Definition sif.c:7

imgReadHeader
int imgReadHeader(const char *fname, IMG *img, int format)
Definition imgfile.c:199

ECAT7_TEST
int ECAT7_TEST
Definition ecat7h.c:6

ecat7WriteSubheaderFromIFT
int ecat7WriteSubheaderFromIFT(FILE *fp, ECAT7_mainheader *h, int strtblk, IFT *ift, int verbose)
Definition ecat7ift.c:583

ecat7ReadScanMatrix
int ecat7ReadScanMatrix(FILE *fp, int first_block, int last_block, ECAT7_scanheader *h, float **fdata)
Definition ecat7r.c:1055

pxlAddFromMask
long long int pxlAddFromMask(IMG_PIXELS *list, IMG *img)
Definition pixel.c:185

imgReadAnalyze
int imgReadAnalyze(const char *dbname, IMG *img)
Definition img_ana.c:24

sif2img
int sif2img(SIF *sif, IMG *img, int copy_header, int copy_frames, int copy_counts, int verbose)
Definition img_sif.c:13

dcmVerifyMagic
int dcmVerifyMagic(const char *filename, FILE *fp)
Definition dcm.c:157

imgReadEcat63Frame
int imgReadEcat63Frame(const char *fname, int frame_to_read, IMG *img, int frame_index)
Definition img_e63.c:1503

pxlRm
int pxlRm(IMG_PIXELS *list, long long int index)
Definition pixel.c:249

mat_numdoc
void mat_numdoc(int matnum, Matval *matval)
Definition ecat63ml.c:254

dcmSOPName
char * dcmSOPName(unsigned int i)
Definition dcm.c:388

ecat63pxlbytes
int ecat63pxlbytes(short int data_type)
Definition ecat63r.c:973

ecat63WriteMainheader
int ecat63WriteMainheader(FILE *fp, ECAT63_mainheader *h)
Definition ecat63w.c:24

ecat63ReadAllToImg
int ecat63ReadAllToImg(const char *fname, IMG *img)
Definition img_e63.c:22

ecat63SortMatlistByFrame
void ecat63SortMatlistByFrame(MATRIXLIST *ml)
Definition ecat63ml.c:297

dcmWriteFileSQDelimItem
int dcmWriteFileSQDelimItem(FILE *fp)
Definition dcm.c:609

ecat63ReadMainheader
int ecat63ReadMainheader(FILE *fp, ECAT63_mainheader *h)
Definition ecat63r.c:25

imgInit
void imgInit(IMG *image)
Definition img.c:60

ecat7ImageheaderToIFT
int ecat7ImageheaderToIFT(ECAT7_imageheader *h, IFT *ift, int verbose)
Definition ecat7ift.c:251

ecat63Scanstarttime
time_t ecat63Scanstarttime(const ECAT63_mainheader *h)
Get calendar time from ECAT 6.3 main header.
Definition ecat63w.c:925

fmedian
float fmedian(float *data, long long int n)
Definition imgminmax.c:593

ecat7Print2DNormheader
void ecat7Print2DNormheader(ECAT7_2Dnormheader *h, FILE *fp)
Definition ecat7p.c:415

imgUnitFromEcat7
void imgUnitFromEcat7(IMG *img, ECAT7_mainheader *h)
Definition imgunits.c:149

libtpcmisc.h
Header file for libtpcmisc.

MAX_STUDYNR_LEN
#define MAX_STUDYNR_LEN
Definition libtpcmisc.h:163

ANALYZE_DSR
Definition libtpcimgio.h:193

ANALYZE_DSR::hist
ANALYZE_HEADER_HISTORY hist
Definition libtpcimgio.h:199

ANALYZE_DSR::little
int little
Definition libtpcimgio.h:201

ANALYZE_DSR::hk
ANALYZE_HEADER_KEY hk
Definition libtpcimgio.h:195

ANALYZE_DSR::dime
ANALYZE_HEADER_IMGDIM dime
Definition libtpcimgio.h:197

ANALYZE_HEADER_HISTORY
Definition libtpcimgio.h:150

ANALYZE_HEADER_HISTORY::vols_added
int vols_added
Definition libtpcimgio.h:176

ANALYZE_HEADER_HISTORY::omax
int omax
Definition libtpcimgio.h:182

ANALYZE_HEADER_HISTORY::smax
int smax
Definition libtpcimgio.h:186

ANALYZE_HEADER_HISTORY::smin
int smin
Definition libtpcimgio.h:188

ANALYZE_HEADER_HISTORY::field_skip
int field_skip
Definition libtpcimgio.h:180

ANALYZE_HEADER_HISTORY::orient
char orient
Definition libtpcimgio.h:158

ANALYZE_HEADER_HISTORY::omin
int omin
Definition libtpcimgio.h:184

ANALYZE_HEADER_HISTORY::views
int views
Definition libtpcimgio.h:174

ANALYZE_HEADER_HISTORY::start_field
int start_field
Definition libtpcimgio.h:178

ANALYZE_HEADER_IMGDIM
Definition libtpcimgio.h:93

ANALYZE_HEADER_IMGDIM::unused14
short int unused14
Definition libtpcimgio.h:110

ANALYZE_HEADER_IMGDIM::dim_un0
short int dim_un0
Definition libtpcimgio.h:122

ANALYZE_HEADER_IMGDIM::funused1
float funused1
Definition libtpcimgio.h:130

ANALYZE_HEADER_IMGDIM::unused9
short int unused9
Definition libtpcimgio.h:100

ANALYZE_HEADER_IMGDIM::datatype
short int datatype
Definition libtpcimgio.h:118

ANALYZE_HEADER_IMGDIM::funused2
float funused2
Definition libtpcimgio.h:132

ANALYZE_HEADER_IMGDIM::funused3
float funused3
Definition libtpcimgio.h:134

ANALYZE_HEADER_IMGDIM::compressed
float compressed
Definition libtpcimgio.h:140

ANALYZE_HEADER_IMGDIM::cal_max
float cal_max
Definition libtpcimgio.h:136

ANALYZE_HEADER_IMGDIM::glmax
int glmax
Definition libtpcimgio.h:144

ANALYZE_HEADER_IMGDIM::cal_min
float cal_min
Definition libtpcimgio.h:138

ANALYZE_HEADER_IMGDIM::verified
float verified
Definition libtpcimgio.h:142

ANALYZE_HEADER_IMGDIM::glmin
int glmin
Definition libtpcimgio.h:146

ANALYZE_HEADER_IMGDIM::unused11
short int unused11
Definition libtpcimgio.h:104

ANALYZE_HEADER_IMGDIM::unused10
short int unused10
Definition libtpcimgio.h:102

ANALYZE_HEADER_IMGDIM::bitpix
short int bitpix
Definition libtpcimgio.h:120

ANALYZE_HEADER_IMGDIM::unused13
short int unused13
Definition libtpcimgio.h:108

ANALYZE_HEADER_IMGDIM::unused8
short int unused8
Definition libtpcimgio.h:98

ANALYZE_HEADER_IMGDIM::unused12
short int unused12
Definition libtpcimgio.h:106

ANALYZE_HEADER_IMGDIM::vox_offset
float vox_offset
Definition libtpcimgio.h:128

ANALYZE_HEADER_KEY
Definition libtpcimgio.h:73

ANALYZE_HEADER_KEY::extents
int extents
Definition libtpcimgio.h:82

ANALYZE_HEADER_KEY::regular
char regular
Definition libtpcimgio.h:87

ANALYZE_HEADER_KEY::sizeof_hdr
int sizeof_hdr
Definition libtpcimgio.h:75

ANALYZE_HEADER_KEY::hkey_un0
char hkey_un0
Definition libtpcimgio.h:89

ANALYZE_HEADER_KEY::session_error
short int session_error
Definition libtpcimgio.h:84

DCMFILE
Definition libtpcimgio.h:2910

DCMFILE::truid
dcmtruid truid
Definition libtpcimgio.h:2916

DCMFILE::item
DCMITEM * item
Definition libtpcimgio.h:2918

DCMFILE::filename
char filename[FILENAME_MAX]
Definition libtpcimgio.h:2912

DCMFILE::fp
FILE * fp
Definition libtpcimgio.h:2914

DCMITEM
Definition libtpcimgio.h:2883

DCMITEM::truid
dcmtruid truid
Definition libtpcimgio.h:2889

DCMITEM::vr
dcmvr vr
Definition libtpcimgio.h:2893

DCMITEM::child_item
struct DCMITEM * child_item
Definition libtpcimgio.h:2897

DCMITEM::next_item
struct DCMITEM * next_item
Definition libtpcimgio.h:2901

DCMITEM::vl
unsigned int vl
Definition libtpcimgio.h:2895

DCMITEM::fp
FILE * fp
Definition libtpcimgio.h:2885

DCMITEM::pos
fpos_t pos
Definition libtpcimgio.h:2887

DCMITEM::rd
char * rd
Definition libtpcimgio.h:2906

DCMITEM::prev_item
struct DCMITEM * prev_item
Definition libtpcimgio.h:2903

DCMITEM::parent_item
struct DCMITEM * parent_item
Definition libtpcimgio.h:2899

DCMITEM::tag
DCMTAG tag
Definition libtpcimgio.h:2891

DCMMATRIX
Definition libtpcimgio.h:2924

DCMMATRIX::frameDur
double frameDur
Definition libtpcimgio.h:2940

DCMMATRIX::plane
unsigned int plane
Definition libtpcimgio.h:2936

DCMMATRIX::frameStart
double frameStart
Definition libtpcimgio.h:2938

DCMMATRIX::filename
char * filename
Definition libtpcimgio.h:2927

DCMMATRIX::acqTime
char acqTime[16]
Definition libtpcimgio.h:2931

DCMMATRIX::acqDate
char acqDate[16]
Definition libtpcimgio.h:2929

DCMMATRIX::frame
unsigned int frame
Definition libtpcimgio.h:2934

DCMML
Definition libtpcimgio.h:2944

DCMML::m
DCMMATRIX * m
Definition libtpcimgio.h:2950

DCMML::anr
unsigned int anr
Definition libtpcimgio.h:2948

DCMML::nr
unsigned int nr
Definition libtpcimgio.h:2946

DCMTAG
Definition libtpcimgio.h:2802

DCMTAG::element
unsigned short int element
Definition libtpcimgio.h:2808

DCMTAG::group
unsigned short int group
Definition libtpcimgio.h:2806

ECAT63_attnheader
Definition libtpcimgio.h:1346

ECAT63_attnheader::attenuation_coeff
float attenuation_coeff
Definition libtpcimgio.h:1374

ECAT63_attnheader::unused1
short int unused1
Definition libtpcimgio.h:1354

ECAT63_attnheader::x_radius
float x_radius
Definition libtpcimgio.h:1368

ECAT63_attnheader::dimension_1
short int dimension_1
Definition libtpcimgio.h:1356

ECAT63_attnheader::data_type
short int data_type
Definition libtpcimgio.h:1350

ECAT63_attnheader::dimension_2
short int dimension_2
Definition libtpcimgio.h:1358

ECAT63_attnheader::attenuation_type
short int attenuation_type
Definition libtpcimgio.h:1352

ECAT63_attnheader::y_origin
float y_origin
Definition libtpcimgio.h:1366

ECAT63_attnheader::x_origin
float x_origin
Definition libtpcimgio.h:1364

ECAT63_attnheader::tilt_angle
float tilt_angle
Definition libtpcimgio.h:1372

ECAT63_attnheader::sample_distance
float sample_distance
Definition libtpcimgio.h:1376

ECAT63_attnheader::scale_factor
float scale_factor
Definition libtpcimgio.h:1362

ECAT63_attnheader::y_radius
float y_radius
Definition libtpcimgio.h:1370

ECAT63_imageheader
Definition libtpcimgio.h:1129

ECAT63_imageheader::x_origin
float x_origin
Definition libtpcimgio.h:1145

ECAT63_imageheader::quant_units
short int quant_units
Definition libtpcimgio.h:1205

ECAT63_imageheader::pixel_size
float pixel_size
Definition libtpcimgio.h:1159

ECAT63_imageheader::y_origin
float y_origin
Definition libtpcimgio.h:1147

ECAT63_imageheader::dimension_2
short int dimension_2
Definition libtpcimgio.h:1141

ECAT63_imageheader::recon_start_month
short int recon_start_month
Definition libtpcimgio.h:1209

ECAT63_imageheader::dimension_1
short int dimension_1
Definition libtpcimgio.h:1139

ECAT63_imageheader::unused1
short int unused1
Definition libtpcimgio.h:1137

ECAT63_imageheader::well_counter_cal_fctr
float well_counter_cal_fctr
Definition libtpcimgio.h:1215

ECAT63_imageheader::data_type
short int data_type
Definition libtpcimgio.h:1133

ECAT63_imageheader::image_min
short int image_min
Definition libtpcimgio.h:1153

ECAT63_imageheader::intrinsic_tilt
float intrinsic_tilt
Definition libtpcimgio.h:1197

ECAT63_imageheader::quant_scale
float quant_scale
Definition libtpcimgio.h:1151

ECAT63_imageheader::frame_start_time
int frame_start_time
Definition libtpcimgio.h:1165

ECAT63_imageheader::recon_start_day
short int recon_start_day
Definition libtpcimgio.h:1207

ECAT63_imageheader::filter_code
short int filter_code
Definition libtpcimgio.h:1179

ECAT63_imageheader::ecat_calibration_fctr
float ecat_calibration_fctr
Definition libtpcimgio.h:1213

ECAT63_imageheader::scan_matrix_num
int scan_matrix_num
Definition libtpcimgio.h:1181

ECAT63_imageheader::frame_duration
int frame_duration
Definition libtpcimgio.h:1163

ECAT63_imageheader::slice_location
short int slice_location
Definition libtpcimgio.h:1167

ECAT63_imageheader::processing_code
short int processing_code
Definition libtpcimgio.h:1201

ECAT63_imageheader::recon_scale
float recon_scale
Definition libtpcimgio.h:1149

ECAT63_imageheader::norm_matrix_num
int norm_matrix_num
Definition libtpcimgio.h:1183

ECAT63_imageheader::recon_duration
int recon_duration
Definition libtpcimgio.h:1175

ECAT63_imageheader::recon_start_min
short int recon_start_min
Definition libtpcimgio.h:1171

ECAT63_imageheader::loss_corr_fctr
float loss_corr_fctr
Definition libtpcimgio.h:1195

ECAT63_imageheader::atten_cor_mat_num
int atten_cor_mat_num
Definition libtpcimgio.h:1185

ECAT63_imageheader::recon_start_year
short int recon_start_year
Definition libtpcimgio.h:1211

ECAT63_imageheader::decay_corr_fctr
float decay_corr_fctr
Definition libtpcimgio.h:1193

ECAT63_imageheader::unused7
short int unused7
Definition libtpcimgio.h:1203

ECAT63_imageheader::num_dimensions
short int num_dimensions
Definition libtpcimgio.h:1135

ECAT63_imageheader::plane_eff_corr_fctr
float plane_eff_corr_fctr
Definition libtpcimgio.h:1191

ECAT63_imageheader::recon_start_hour
short int recon_start_hour
Definition libtpcimgio.h:1169

ECAT63_imageheader::image_rotation
float image_rotation
Definition libtpcimgio.h:1189

ECAT63_imageheader::slice_width
float slice_width
Definition libtpcimgio.h:1161

ECAT63_imageheader::image_max
short int image_max
Definition libtpcimgio.h:1155

ECAT63_imageheader::recon_start_sec
short int recon_start_sec
Definition libtpcimgio.h:1173

ECAT63_mainheader
Definition libtpcimgio.h:1002

ECAT63_mainheader::axial_fov
float axial_fov
Definition libtpcimgio.h:1050

ECAT63_mainheader::collimator
float collimator
Definition libtpcimgio.h:1121

ECAT63_mainheader::bed_elevation
float bed_elevation
Definition libtpcimgio.h:1042

ECAT63_mainheader::gantry_rotation
float gantry_rotation
Definition libtpcimgio.h:1040

ECAT63_mainheader::plane_separation
float plane_separation
Definition libtpcimgio.h:1113

ECAT63_mainheader::isotope_halflife
float isotope_halflife
Definition libtpcimgio.h:1034

ECAT63_mainheader::scan_start_month
short int scan_start_month
Definition libtpcimgio.h:1022

ECAT63_mainheader::sw_version
short int sw_version
Definition libtpcimgio.h:1010

ECAT63_mainheader::coin_samp_mode
short int coin_samp_mode
Definition libtpcimgio.h:1057

ECAT63_mainheader::lwr_true_thres
short int lwr_true_thres
Definition libtpcimgio.h:1117

ECAT63_mainheader::compression_code
short int compression_code
Definition libtpcimgio.h:1065

ECAT63_mainheader::bed_type
short int bed_type
Definition libtpcimgio.h:1091

ECAT63_mainheader::patient_sex
char patient_sex
Definition libtpcimgio.h:1073

ECAT63_mainheader::calibration_factor
float calibration_factor
Definition libtpcimgio.h:1061

ECAT63_mainheader::wobble_speed
short int wobble_speed
Definition libtpcimgio.h:1046

ECAT63_mainheader::patient_dexterity
char patient_dexterity
Definition libtpcimgio.h:1081

ECAT63_mainheader::scan_start_second
short int scan_start_second
Definition libtpcimgio.h:1030

ECAT63_mainheader::num_bed_pos
short int num_bed_pos
Definition libtpcimgio.h:1107

ECAT63_mainheader::transaxial_samp_mode
short int transaxial_samp_mode
Definition libtpcimgio.h:1055

ECAT63_mainheader::rot_source_speed
short int rot_source_speed
Definition libtpcimgio.h:1044

ECAT63_mainheader::acquisition_type
short int acquisition_type
Definition libtpcimgio.h:1089

ECAT63_mainheader::calibration_units
short int calibration_units
Definition libtpcimgio.h:1063

ECAT63_mainheader::scan_start_year
short int scan_start_year
Definition libtpcimgio.h:1024

ECAT63_mainheader::num_gates
short int num_gates
Definition libtpcimgio.h:1104

ECAT63_mainheader::num_planes
short int num_planes
Definition libtpcimgio.h:1098

ECAT63_mainheader::transaxial_fov
float transaxial_fov
Definition libtpcimgio.h:1052

ECAT63_mainheader::scan_start_day
short int scan_start_day
Definition libtpcimgio.h:1020

ECAT63_mainheader::gantry_tilt
float gantry_tilt
Definition libtpcimgio.h:1038

ECAT63_mainheader::septa_type
short int septa_type
Definition libtpcimgio.h:1093

ECAT63_mainheader::transm_source_type
short int transm_source_type
Definition libtpcimgio.h:1048

ECAT63_mainheader::scan_start_minute
short int scan_start_minute
Definition libtpcimgio.h:1028

ECAT63_mainheader::num_frames
short int num_frames
Definition libtpcimgio.h:1101

ECAT63_mainheader::file_type
short int file_type
Definition libtpcimgio.h:1016

ECAT63_mainheader::data_type
short int data_type
Definition libtpcimgio.h:1012

ECAT63_mainheader::lwr_sctr_thres
short int lwr_sctr_thres
Definition libtpcimgio.h:1115

ECAT63_mainheader::axial_samp_mode
short int axial_samp_mode
Definition libtpcimgio.h:1059

ECAT63_mainheader::init_bed_position
float init_bed_position
Definition libtpcimgio.h:1109

ECAT63_mainheader::scan_start_hour
short int scan_start_hour
Definition libtpcimgio.h:1026

ECAT63_mainheader::upr_true_thres
short int upr_true_thres
Definition libtpcimgio.h:1119

ECAT63_mainheader::system_type
short int system_type
Definition libtpcimgio.h:1014

ECAT63_normheader
Definition libtpcimgio.h:1295

ECAT63_normheader::norm_year
short int norm_year
Definition libtpcimgio.h:1338

ECAT63_normheader::data_type
short int data_type
Definition libtpcimgio.h:1299

ECAT63_normheader::dimension_1
short int dimension_1
Definition libtpcimgio.h:1303

ECAT63_normheader::unused8
short int unused8
Definition libtpcimgio.h:1332

ECAT63_normheader::norm_day
short int norm_day
Definition libtpcimgio.h:1330

ECAT63_normheader::unused6
short int unused6
Definition libtpcimgio.h:1324

ECAT63_normheader::scale_factor
float scale_factor
Definition libtpcimgio.h:1310

ECAT63_normheader::norm_month
short int norm_month
Definition libtpcimgio.h:1334

ECAT63_normheader::norm_second
short int norm_second
Definition libtpcimgio.h:1326

ECAT63_normheader::fov_source_width
float fov_source_width
Definition libtpcimgio.h:1314

ECAT63_normheader::unused7
short int unused7
Definition libtpcimgio.h:1328

ECAT63_normheader::norm_hour
short int norm_hour
Definition libtpcimgio.h:1318

ECAT63_normheader::unused5
short int unused5
Definition libtpcimgio.h:1320

ECAT63_normheader::unused9
short int unused9
Definition libtpcimgio.h:1336

ECAT63_normheader::unused10
short int unused10
Definition libtpcimgio.h:1340

ECAT63_normheader::dimension_2
short int dimension_2
Definition libtpcimgio.h:1305

ECAT63_normheader::norm_minute
short int norm_minute
Definition libtpcimgio.h:1322

ECAT63_scanheader
Definition libtpcimgio.h:1225

ECAT63_scanheader::smoothing
short int smoothing
Definition libtpcimgio.h:1237

ECAT63_scanheader::scan_min
short int scan_min
Definition libtpcimgio.h:1261

ECAT63_scanheader::dimension_2
short int dimension_2
Definition libtpcimgio.h:1235

ECAT63_scanheader::delayed
int delayed
Definition libtpcimgio.h:1267

ECAT63_scanheader::tot_avg_cor
float tot_avg_cor
Definition libtpcimgio.h:1279

ECAT63_scanheader::gate_duration
int gate_duration
Definition libtpcimgio.h:1251

ECAT63_scanheader::sample_distance
float sample_distance
Definition libtpcimgio.h:1243

ECAT63_scanheader::processing_code
short int processing_code
Definition libtpcimgio.h:1239

ECAT63_scanheader::prompts
int prompts
Definition libtpcimgio.h:1265

ECAT63_scanheader::r_wave_offset
int r_wave_offset
Definition libtpcimgio.h:1253

ECAT63_scanheader::tot_avg_uncor
float tot_avg_uncor
Definition libtpcimgio.h:1281

ECAT63_scanheader::isotope_halflife
float isotope_halflife
Definition libtpcimgio.h:1247

ECAT63_scanheader::multiples
int multiples
Definition libtpcimgio.h:1269

ECAT63_scanheader::frame_duration
int frame_duration
Definition libtpcimgio.h:1287

ECAT63_scanheader::total_coin_rate
int total_coin_rate
Definition libtpcimgio.h:1283

ECAT63_scanheader::scan_max
short int scan_max
Definition libtpcimgio.h:1263

ECAT63_scanheader::loss_correction_fctr
float loss_correction_fctr
Definition libtpcimgio.h:1289

ECAT63_scanheader::net_trues
int net_trues
Definition libtpcimgio.h:1271

ECAT63_scanheader::unused4
short int unused4
Definition libtpcimgio.h:1255

ECAT63_scanheader::frame_start_time
int frame_start_time
Definition libtpcimgio.h:1285

ECAT63_scanheader::dimension_1
short int dimension_1
Definition libtpcimgio.h:1233

ECAT63_scanheader::scale_factor
float scale_factor
Definition libtpcimgio.h:1257

ECAT63_scanheader::frame_duration_sec
short int frame_duration_sec
Definition libtpcimgio.h:1249

ECAT63_scanheader::data_type
short int data_type
Definition libtpcimgio.h:1229

ECAT7_2Dnormheader
Definition libtpcimgio.h:694

ECAT7_2Dnormheader::norm_quality_factor
float norm_quality_factor
Definition libtpcimgio.h:716

ECAT7_2Dnormheader::norm_min
float norm_min
Definition libtpcimgio.h:710

ECAT7_2Dnormheader::scale_factor
float scale_factor
Definition libtpcimgio.h:708

ECAT7_2Dnormheader::num_dimensions
short int num_dimensions
Definition libtpcimgio.h:698

ECAT7_2Dnormheader::ring_difference
short int ring_difference
Definition libtpcimgio.h:706

ECAT7_2Dnormheader::norm_max
float norm_max
Definition libtpcimgio.h:712

ECAT7_2Dnormheader::storage_order
short int storage_order
Definition libtpcimgio.h:720

ECAT7_2Dnormheader::num_z_elements
short int num_z_elements
Definition libtpcimgio.h:704

ECAT7_2Dnormheader::norm_quality_factor_code
short int norm_quality_factor_code
Definition libtpcimgio.h:718

ECAT7_2Dnormheader::data_type
short int data_type
Definition libtpcimgio.h:696

ECAT7_2Dnormheader::num_angles
short int num_angles
Definition libtpcimgio.h:702

ECAT7_2Dnormheader::fov_source_width
float fov_source_width
Definition libtpcimgio.h:714

ECAT7_2Dnormheader::num_r_elements
short int num_r_elements
Definition libtpcimgio.h:700

ECAT7_2Dnormheader::span
short int span
Definition libtpcimgio.h:722

ECAT7_2Dscanheader
Definition libtpcimgio.h:624

ECAT7_2Dscanheader::total_coin_rate
int total_coin_rate
Definition libtpcimgio.h:678

ECAT7_2Dscanheader::corrections_applied
short int corrections_applied
Definition libtpcimgio.h:634

ECAT7_2Dscanheader::deadtime_correction_factor
float deadtime_correction_factor
Definition libtpcimgio.h:684

ECAT7_2Dscanheader::num_angles
short int num_angles
Definition libtpcimgio.h:632

ECAT7_2Dscanheader::delayed
int delayed
Definition libtpcimgio.h:664

ECAT7_2Dscanheader::y_resolution
float y_resolution
Definition libtpcimgio.h:642

ECAT7_2Dscanheader::num_z_elements
short int num_z_elements
Definition libtpcimgio.h:636

ECAT7_2Dscanheader::z_resolution
float z_resolution
Definition libtpcimgio.h:644

ECAT7_2Dscanheader::num_accepted_beats
int num_accepted_beats
Definition libtpcimgio.h:654

ECAT7_2Dscanheader::num_r_elements
short int num_r_elements
Definition libtpcimgio.h:630

ECAT7_2Dscanheader::gate_duration
int gate_duration
Definition libtpcimgio.h:650

ECAT7_2Dscanheader::w_resolution
float w_resolution
Definition libtpcimgio.h:646

ECAT7_2Dscanheader::frame_duration
int frame_duration
Definition libtpcimgio.h:682

ECAT7_2Dscanheader::ring_difference
short int ring_difference
Definition libtpcimgio.h:638

ECAT7_2Dscanheader::frame_start_time
int frame_start_time
Definition libtpcimgio.h:680

ECAT7_2Dscanheader::scan_min
short int scan_min
Definition libtpcimgio.h:658

ECAT7_2Dscanheader::multiples
int multiples
Definition libtpcimgio.h:666

ECAT7_2Dscanheader::scan_max
short int scan_max
Definition libtpcimgio.h:660

ECAT7_2Dscanheader::scale_factor
float scale_factor
Definition libtpcimgio.h:656

ECAT7_2Dscanheader::tot_avg_cor
float tot_avg_cor
Definition libtpcimgio.h:674

ECAT7_2Dscanheader::r_wave_offset
int r_wave_offset
Definition libtpcimgio.h:652

ECAT7_2Dscanheader::tot_avg_uncor
float tot_avg_uncor
Definition libtpcimgio.h:676

ECAT7_2Dscanheader::x_resolution
float x_resolution
Definition libtpcimgio.h:640

ECAT7_2Dscanheader::prompts
int prompts
Definition libtpcimgio.h:662

ECAT7_2Dscanheader::data_type
short int data_type
Definition libtpcimgio.h:626

ECAT7_2Dscanheader::net_trues
int net_trues
Definition libtpcimgio.h:668

ECAT7_2Dscanheader::num_dimensions
short int num_dimensions
Definition libtpcimgio.h:628

ECAT7_MATRIXLIST
Definition libtpcimgio.h:902

ECAT7_MATRIXLIST::matdir
ECAT7_MatDir * matdir
Definition libtpcimgio.h:908

ECAT7_MATRIXLIST::matrixSpace
int matrixSpace
Definition libtpcimgio.h:906

ECAT7_MATRIXLIST::matrixNr
int matrixNr
Definition libtpcimgio.h:904

ECAT7_MatDir
Definition libtpcimgio.h:890

ECAT7_MatDir::id
int id
Definition libtpcimgio.h:892

ECAT7_MatDir::strtblk
int strtblk
Definition libtpcimgio.h:894

ECAT7_MatDir::endblk
int endblk
Definition libtpcimgio.h:896

ECAT7_MatDir::status
int status
Definition libtpcimgio.h:898

ECAT7_Matval
Definition libtpcimgio.h:912

ECAT7_Matval::plane
int plane
Definition libtpcimgio.h:916

ECAT7_Matval::gate
int gate
Definition libtpcimgio.h:918

ECAT7_Matval::data
int data
Definition libtpcimgio.h:920

ECAT7_Matval::bed
int bed
Definition libtpcimgio.h:922

ECAT7_Matval::frame
int frame
Definition libtpcimgio.h:914

ECAT7_attenheader
Definition libtpcimgio.h:732

ECAT7_attenheader::num_r_elements
short int num_r_elements
Definition libtpcimgio.h:740

ECAT7_attenheader::attenuation_coeff
float attenuation_coeff
Definition libtpcimgio.h:768

ECAT7_attenheader::x_offset
float x_offset
Definition libtpcimgio.h:758

ECAT7_attenheader::scale_factor
float scale_factor
Definition libtpcimgio.h:756

ECAT7_attenheader::w_resolution
float w_resolution
Definition libtpcimgio.h:754

ECAT7_attenheader::attenuation_type
short int attenuation_type
Definition libtpcimgio.h:738

ECAT7_attenheader::skull_thickness
float skull_thickness
Definition libtpcimgio.h:774

ECAT7_attenheader::attenuation_min
float attenuation_min
Definition libtpcimgio.h:770

ECAT7_attenheader::y_radius
float y_radius
Definition libtpcimgio.h:764

ECAT7_attenheader::num_additional_atten_coeff
short int num_additional_atten_coeff
Definition libtpcimgio.h:776

ECAT7_attenheader::num_dimensions
short int num_dimensions
Definition libtpcimgio.h:736

ECAT7_attenheader::edge_finding_threshold
float edge_finding_threshold
Definition libtpcimgio.h:780

ECAT7_attenheader::tilt_angle
float tilt_angle
Definition libtpcimgio.h:766

ECAT7_attenheader::num_z_elements
short int num_z_elements
Definition libtpcimgio.h:744

ECAT7_attenheader::data_type
short int data_type
Definition libtpcimgio.h:734

ECAT7_attenheader::num_angles
short int num_angles
Definition libtpcimgio.h:742

ECAT7_attenheader::y_resolution
float y_resolution
Definition libtpcimgio.h:750

ECAT7_attenheader::storage_order
short int storage_order
Definition libtpcimgio.h:782

ECAT7_attenheader::ring_difference
short int ring_difference
Definition libtpcimgio.h:746

ECAT7_attenheader::x_resolution
float x_resolution
Definition libtpcimgio.h:748

ECAT7_attenheader::x_radius
float x_radius
Definition libtpcimgio.h:762

ECAT7_attenheader::y_offset
float y_offset
Definition libtpcimgio.h:760

ECAT7_attenheader::z_resolution
float z_resolution
Definition libtpcimgio.h:752

ECAT7_attenheader::attenuation_max
float attenuation_max
Definition libtpcimgio.h:772

ECAT7_attenheader::span
short int span
Definition libtpcimgio.h:784

ECAT7_imageheader
Definition libtpcimgio.h:428

ECAT7_imageheader::y_offset
float y_offset
Definition libtpcimgio.h:442

ECAT7_imageheader::decay_corr_fctr
float decay_corr_fctr
Definition libtpcimgio.h:478

ECAT7_imageheader::scale_factor
float scale_factor
Definition libtpcimgio.h:448

ECAT7_imageheader::filter_scatter_fraction
float filter_scatter_fraction
Definition libtpcimgio.h:496

ECAT7_imageheader::mt_1_2
float mt_1_2
Definition libtpcimgio.h:504

ECAT7_imageheader::frame_duration
int frame_duration
Definition libtpcimgio.h:460

ECAT7_imageheader::r_wave_offset
int r_wave_offset
Definition libtpcimgio.h:484

ECAT7_imageheader::mt_3_2
float mt_3_2
Definition libtpcimgio.h:516

ECAT7_imageheader::filter_code
short int filter_code
Definition libtpcimgio.h:464

ECAT7_imageheader::filter_scatter_slope
float filter_scatter_slope
Definition libtpcimgio.h:498

ECAT7_imageheader::mt_3_3
float mt_3_3
Definition libtpcimgio.h:518

ECAT7_imageheader::image_max
short int image_max
Definition libtpcimgio.h:452

ECAT7_imageheader::filter_resolution
float filter_resolution
Definition libtpcimgio.h:490

ECAT7_imageheader::image_min
short int image_min
Definition libtpcimgio.h:450

ECAT7_imageheader::zfilter_order
short int zfilter_order
Definition libtpcimgio.h:534

ECAT7_imageheader::z_offset
float z_offset
Definition libtpcimgio.h:444

ECAT7_imageheader::mt_3_1
float mt_3_1
Definition libtpcimgio.h:514

ECAT7_imageheader::x_pixel_size
float x_pixel_size
Definition libtpcimgio.h:454

ECAT7_imageheader::recon_zoom
float recon_zoom
Definition libtpcimgio.h:446

ECAT7_imageheader::rfilter_code
short int rfilter_code
Definition libtpcimgio.h:524

ECAT7_imageheader::mt_1_3
float mt_1_3
Definition libtpcimgio.h:506

ECAT7_imageheader::mt_1_4
float mt_1_4
Definition libtpcimgio.h:536

ECAT7_imageheader::filter_cutoff_frequency
float filter_cutoff_frequency
Definition libtpcimgio.h:488

ECAT7_imageheader::y_pixel_size
float y_pixel_size
Definition libtpcimgio.h:456

ECAT7_imageheader::frame_start_time
int frame_start_time
Definition libtpcimgio.h:462

ECAT7_imageheader::x_resolution
float x_resolution
Definition libtpcimgio.h:466

ECAT7_imageheader::zfilter_code
short int zfilter_code
Definition libtpcimgio.h:532

ECAT7_imageheader::filter_order
short int filter_order
Definition libtpcimgio.h:494

ECAT7_imageheader::num_r_elements
float num_r_elements
Definition libtpcimgio.h:472

ECAT7_imageheader::num_angles
float num_angles
Definition libtpcimgio.h:474

ECAT7_imageheader::y_dimension
short int y_dimension
Definition libtpcimgio.h:436

ECAT7_imageheader::rfilter_cutoff
float rfilter_cutoff
Definition libtpcimgio.h:520

ECAT7_imageheader::num_accepted_beats
int num_accepted_beats
Definition libtpcimgio.h:486

ECAT7_imageheader::z_dimension
short int z_dimension
Definition libtpcimgio.h:438

ECAT7_imageheader::x_offset
float x_offset
Definition libtpcimgio.h:440

ECAT7_imageheader::processing_code
int processing_code
Definition libtpcimgio.h:480

ECAT7_imageheader::mt_1_1
float mt_1_1
Definition libtpcimgio.h:502

ECAT7_imageheader::zfilter_cutoff
float zfilter_cutoff
Definition libtpcimgio.h:528

ECAT7_imageheader::zfilter_resolution
float zfilter_resolution
Definition libtpcimgio.h:530

ECAT7_imageheader::y_resolution
float y_resolution
Definition libtpcimgio.h:468

ECAT7_imageheader::recon_type
short int recon_type
Definition libtpcimgio.h:544

ECAT7_imageheader::z_pixel_size
float z_pixel_size
Definition libtpcimgio.h:458

ECAT7_imageheader::mt_3_4
float mt_3_4
Definition libtpcimgio.h:540

ECAT7_imageheader::scatter_type
short int scatter_type
Definition libtpcimgio.h:542

ECAT7_imageheader::filter_ramp_slope
float filter_ramp_slope
Definition libtpcimgio.h:492

ECAT7_imageheader::rfilter_resolution
float rfilter_resolution
Definition libtpcimgio.h:522

ECAT7_imageheader::mt_2_4
float mt_2_4
Definition libtpcimgio.h:538

ECAT7_imageheader::mt_2_2
float mt_2_2
Definition libtpcimgio.h:510

ECAT7_imageheader::recon_views
short int recon_views
Definition libtpcimgio.h:546

ECAT7_imageheader::num_dimensions
short int num_dimensions
Definition libtpcimgio.h:432

ECAT7_imageheader::mt_2_1
float mt_2_1
Definition libtpcimgio.h:508

ECAT7_imageheader::gate_duration
int gate_duration
Definition libtpcimgio.h:482

ECAT7_imageheader::mt_2_3
float mt_2_3
Definition libtpcimgio.h:512

ECAT7_imageheader::z_rotation_angle
float z_rotation_angle
Definition libtpcimgio.h:476

ECAT7_imageheader::rfilter_order
short int rfilter_order
Definition libtpcimgio.h:526

ECAT7_imageheader::x_dimension
short int x_dimension
Definition libtpcimgio.h:434

ECAT7_imageheader::data_type
short int data_type
Definition libtpcimgio.h:430

ECAT7_imageheader::z_resolution
float z_resolution
Definition libtpcimgio.h:470

ECAT7_mainheader
Definition libtpcimgio.h:300

ECAT7_mainheader::isotope_halflife
float isotope_halflife
Definition libtpcimgio.h:318

ECAT7_mainheader::file_type
short int file_type
Definition libtpcimgio.h:310

ECAT7_mainheader::compression_code
short int compression_code
Definition libtpcimgio.h:350

ECAT7_mainheader::distance_scanned
float distance_scanned
Definition libtpcimgio.h:334

ECAT7_mainheader::system_type
short int system_type
Definition libtpcimgio.h:308

ECAT7_mainheader::bin_size
float bin_size
Definition libtpcimgio.h:409

ECAT7_mainheader::scan_start_time
int scan_start_time
Definition libtpcimgio.h:314

ECAT7_mainheader::branching_fraction
float branching_fraction
Definition libtpcimgio.h:412

ECAT7_mainheader::num_frames
short int num_frames
Definition libtpcimgio.h:387

ECAT7_mainheader::patient_dexterity
char patient_dexterity
Definition libtpcimgio.h:360

ECAT7_mainheader::coin_samp_mode
short int coin_samp_mode
Definition libtpcimgio.h:340

ECAT7_mainheader::init_bed_position
float init_bed_position
Definition libtpcimgio.h:393

ECAT7_mainheader::well_counter_corr_factor
float well_counter_corr_factor
Definition libtpcimgio.h:418

ECAT7_mainheader::dose_start_time
int dose_start_time
Definition libtpcimgio.h:414

ECAT7_mainheader::angular_compression
short int angular_compression
Definition libtpcimgio.h:338

ECAT7_mainheader::calibration_units
short int calibration_units
Definition libtpcimgio.h:346

ECAT7_mainheader::patient_sex
char patient_sex
Definition libtpcimgio.h:358

ECAT7_mainheader::patient_weight
float patient_weight
Definition libtpcimgio.h:366

ECAT7_mainheader::gantry_tilt
float gantry_tilt
Definition libtpcimgio.h:322

ECAT7_mainheader::patient_age
float patient_age
Definition libtpcimgio.h:362

ECAT7_mainheader::septa_state
short int septa_state
Definition libtpcimgio.h:422

ECAT7_mainheader::num_gates
short int num_gates
Definition libtpcimgio.h:389

ECAT7_mainheader::num_planes
short int num_planes
Definition libtpcimgio.h:385

ECAT7_mainheader::lwr_true_thres
short int lwr_true_thres
Definition libtpcimgio.h:401

ECAT7_mainheader::gantry_rotation
float gantry_rotation
Definition libtpcimgio.h:324

ECAT7_mainheader::wobble_speed
short int wobble_speed
Definition libtpcimgio.h:330

ECAT7_mainheader::acquisition_mode
short int acquisition_mode
Definition libtpcimgio.h:407

ECAT7_mainheader::plane_separation
float plane_separation
Definition libtpcimgio.h:397

ECAT7_mainheader::calibration_units_label
short int calibration_units_label
Definition libtpcimgio.h:348

ECAT7_mainheader::num_bed_pos
short int num_bed_pos
Definition libtpcimgio.h:391

ECAT7_mainheader::bed_elevation
float bed_elevation
Definition libtpcimgio.h:326

ECAT7_mainheader::transaxial_fov
float transaxial_fov
Definition libtpcimgio.h:336

ECAT7_mainheader::ecat_calibration_factor
float ecat_calibration_factor
Definition libtpcimgio.h:344

ECAT7_mainheader::sw_version
short int sw_version
Definition libtpcimgio.h:306

ECAT7_mainheader::transm_source_type
short int transm_source_type
Definition libtpcimgio.h:332

ECAT7_mainheader::dosage
float dosage
Definition libtpcimgio.h:416

ECAT7_mainheader::acquisition_type
short int acquisition_type
Definition libtpcimgio.h:379

ECAT7_mainheader::patient_height
float patient_height
Definition libtpcimgio.h:364

ECAT7_mainheader::intrinsic_tilt
float intrinsic_tilt
Definition libtpcimgio.h:328

ECAT7_mainheader::axial_samp_mode
short int axial_samp_mode
Definition libtpcimgio.h:342

ECAT7_mainheader::patient_orientation
short int patient_orientation
Definition libtpcimgio.h:381

ECAT7_mainheader::upr_true_thres
short int upr_true_thres
Definition libtpcimgio.h:403

ECAT7_mainheader::lwr_sctr_thres
short int lwr_sctr_thres
Definition libtpcimgio.h:399

ECAT7_mainheader::patient_birth_date
int patient_birth_date
Definition libtpcimgio.h:370

ECAT7_normheader
Definition libtpcimgio.h:794

ECAT7_normheader::num_r_elements
short int num_r_elements
Definition libtpcimgio.h:798

ECAT7_normheader::data_type
short int data_type
Definition libtpcimgio.h:796

ECAT7_normheader::num_transaxial_crystals
short int num_transaxial_crystals
Definition libtpcimgio.h:800

ECAT7_normheader::num_geo_corr_planes
short int num_geo_corr_planes
Definition libtpcimgio.h:806

ECAT7_normheader::uld
short int uld
Definition libtpcimgio.h:808

ECAT7_normheader::crystals_per_ring
short int crystals_per_ring
Definition libtpcimgio.h:804

ECAT7_normheader::max_ring_diff
short int max_ring_diff
Definition libtpcimgio.h:826

ECAT7_normheader::norm_quality_factor
float norm_quality_factor
Definition libtpcimgio.h:814

ECAT7_normheader::num_crystal_rings
short int num_crystal_rings
Definition libtpcimgio.h:802

ECAT7_normheader::norm_quality_factor_code
short int norm_quality_factor_code
Definition libtpcimgio.h:816

ECAT7_normheader::span
short int span
Definition libtpcimgio.h:824

ECAT7_normheader::scatter_energy
short int scatter_energy
Definition libtpcimgio.h:812

ECAT7_normheader::lld
short int lld
Definition libtpcimgio.h:810

ECAT7_polmapheader
Definition libtpcimgio.h:834

ECAT7_polmapheader::image_max
short int image_max
Definition libtpcimgio.h:858

ECAT7_polmapheader::pixel_size
float pixel_size
Definition libtpcimgio.h:862

ECAT7_polmapheader::num_rings
short int num_rings
Definition libtpcimgio.h:840

ECAT7_polmapheader::frame_start_time
int frame_start_time
Definition libtpcimgio.h:866

ECAT7_polmapheader::gate_duration
int gate_duration
Definition libtpcimgio.h:874

ECAT7_polmapheader::processing_code
short int processing_code
Definition libtpcimgio.h:868

ECAT7_polmapheader::data_type
short int data_type
Definition libtpcimgio.h:836

ECAT7_polmapheader::start_angle
short int start_angle
Definition libtpcimgio.h:848

ECAT7_polmapheader::num_accepted_beats
int num_accepted_beats
Definition libtpcimgio.h:878

ECAT7_polmapheader::polar_map_type
short int polar_map_type
Definition libtpcimgio.h:838

ECAT7_polmapheader::image_min
short int image_min
Definition libtpcimgio.h:856

ECAT7_polmapheader::frame_duration
int frame_duration
Definition libtpcimgio.h:864

ECAT7_polmapheader::position_data
short int position_data
Definition libtpcimgio.h:854

ECAT7_polmapheader::scale_factor
float scale_factor
Definition libtpcimgio.h:860

ECAT7_polmapheader::quant_units
short int quant_units
Definition libtpcimgio.h:870

ECAT7_polmapheader::r_wave_offset
int r_wave_offset
Definition libtpcimgio.h:876

ECAT7_scanheader
Definition libtpcimgio.h:554

ECAT7_scanheader::r_wave_offset
int r_wave_offset
Definition libtpcimgio.h:586

ECAT7_scanheader::scan_min
short int scan_min
Definition libtpcimgio.h:592

ECAT7_scanheader::num_r_elements
short int num_r_elements
Definition libtpcimgio.h:560

ECAT7_scanheader::num_angles
short int num_angles
Definition libtpcimgio.h:562

ECAT7_scanheader::w_resolution
float w_resolution
Definition libtpcimgio.h:580

ECAT7_scanheader::tot_avg_cor
float tot_avg_cor
Definition libtpcimgio.h:604

ECAT7_scanheader::data_type
short int data_type
Definition libtpcimgio.h:556

ECAT7_scanheader::deadtime_correction_factor
float deadtime_correction_factor
Definition libtpcimgio.h:614

ECAT7_scanheader::x_resolution
float x_resolution
Definition libtpcimgio.h:574

ECAT7_scanheader::scale_factor
float scale_factor
Definition libtpcimgio.h:590

ECAT7_scanheader::num_dimensions
short int num_dimensions
Definition libtpcimgio.h:558

ECAT7_scanheader::z_resolution
float z_resolution
Definition libtpcimgio.h:578

ECAT7_scanheader::axial_compression
short int axial_compression
Definition libtpcimgio.h:572

ECAT7_scanheader::net_trues
int net_trues
Definition libtpcimgio.h:602

ECAT7_scanheader::storage_order
short int storage_order
Definition libtpcimgio.h:570

ECAT7_scanheader::gate_duration
int gate_duration
Definition libtpcimgio.h:584

ECAT7_scanheader::scan_max
short int scan_max
Definition libtpcimgio.h:594

ECAT7_scanheader::frame_start_time
int frame_start_time
Definition libtpcimgio.h:610

ECAT7_scanheader::tot_avg_uncor
float tot_avg_uncor
Definition libtpcimgio.h:606

ECAT7_scanheader::total_coin_rate
int total_coin_rate
Definition libtpcimgio.h:608

ECAT7_scanheader::v_resolution
float v_resolution
Definition libtpcimgio.h:576

ECAT7_scanheader::frame_duration
int frame_duration
Definition libtpcimgio.h:612

ECAT7_scanheader::ring_difference
short int ring_difference
Definition libtpcimgio.h:568

ECAT7_scanheader::multiples
int multiples
Definition libtpcimgio.h:600

ECAT7_scanheader::prompts
int prompts
Definition libtpcimgio.h:596

ECAT7_scanheader::num_accepted_beats
int num_accepted_beats
Definition libtpcimgio.h:588

ECAT7_scanheader::corrections_applied
short int corrections_applied
Definition libtpcimgio.h:564

ECAT7_scanheader::delayed
int delayed
Definition libtpcimgio.h:598

ECAT_HEADERS
Definition libtpcimgio.h:2717

ECAT_HEADERS::mh
IFT mh
Definition libtpcimgio.h:2719

ECAT_HEADERS::nr
int nr
Definition libtpcimgio.h:2721

ECAT_HEADERS::m
ECAT_MATRIX * m
Definition libtpcimgio.h:2723

ECAT_MATRIX
Definition libtpcimgio.h:2705

ECAT_MATRIX::sh
IFT sh
Definition libtpcimgio.h:2711

ECAT_MATRIX::f
float * f
Definition libtpcimgio.h:2713

ECAT_MATRIX::mnum
int mnum
Definition libtpcimgio.h:2707

ECAT_MATRIX::matval
ECAT7_Matval matval
Definition libtpcimgio.h:2709

IFT
Definition libtpcmisc.h:264

IMG_PIXEL
Definition libtpcimgio.h:1603

IMG_PIXEL::y
int y
Definition libtpcimgio.h:1607

IMG_PIXEL::z
int z
Definition libtpcimgio.h:1609

IMG_PIXEL::x
int x
Definition libtpcimgio.h:1605

IMG_PIXEL::f
int f
Definition libtpcimgio.h:1611

IMG_PIXELS
Definition libtpcimgio.h:1615

IMG_PIXELS::_pxlNr
long long int _pxlNr
Definition libtpcimgio.h:1619

IMG_PIXELS::p
IMG_PIXEL * p
Definition libtpcimgio.h:1621

IMG_PIXELS::pxlNr
long long int pxlNr
Definition libtpcimgio.h:1617

IMG_RANGE
Definition libtpcimgio.h:1625

IMG_RANGE::f2
int f2
Definition libtpcimgio.h:1641

IMG_RANGE::x2
int x2
Definition libtpcimgio.h:1629

IMG_RANGE::z1
int z1
Definition libtpcimgio.h:1635

IMG_RANGE::x1
int x1
Definition libtpcimgio.h:1627

IMG_RANGE::y1
int y1
Definition libtpcimgio.h:1631

IMG_RANGE::f1
int f1
Definition libtpcimgio.h:1639

IMG_RANGE::z2
int z2
Definition libtpcimgio.h:1637

IMG_RANGE::y2
int y2
Definition libtpcimgio.h:1633

IMG
Definition libtpcimgio.h:1657

IMG::pixel
float * pixel
Definition libtpcimgio.h:1807

IMG::sizex
float sizex
Definition libtpcimgio.h:1714

IMG::polarmap_num_rings
int polarmap_num_rings
Definition libtpcimgio.h:1758

IMG::dimx
unsigned short int dimx
Definition libtpcimgio.h:1780

IMG::branchingFraction
float branchingFraction
Definition libtpcimgio.h:1690

IMG::type
char type
Definition libtpcimgio.h:1704

IMG::resolutionx
float resolutionx
Definition libtpcimgio.h:1726

IMG::errstatus
int errstatus
Definition libtpcimgio.h:1842

IMG::sd
float * sd
Definition libtpcimgio.h:1829

IMG::resolutiony
float resolutiony
Definition libtpcimgio.h:1728

IMG::sampleDistance
float sampleDistance
Definition libtpcimgio.h:1712

IMG::polarmap_start_angle
short int polarmap_start_angle
Definition libtpcimgio.h:1771

IMG::gapx
float gapx
Definition libtpcimgio.h:1720

IMG::m
float **** m
Definition libtpcimgio.h:1799

IMG::decayCorrection
char decayCorrection
Definition libtpcimgio.h:1688

IMG::transaxialFOV
float transaxialFOV
Definition libtpcimgio.h:1710

IMG::unit
char unit
Definition libtpcimgio.h:1673

IMG::row
float *** row
Definition libtpcimgio.h:1803

IMG::status
char status
Definition libtpcimgio.h:1665

IMG::scanStart
time_t scanStart
Definition libtpcimgio.h:1692

IMG::_fileFormat
int _fileFormat
Definition libtpcimgio.h:1735

IMG::prompts
float * prompts
Definition libtpcimgio.h:1831

IMG::dimt
unsigned short int dimt
Definition libtpcimgio.h:1778

IMG::_dataType
int _dataType
Definition libtpcimgio.h:1732

IMG::planeNumber
int * planeNumber
Definition libtpcimgio.h:1809

IMG::ift
IFT ift
Definition libtpcimgio.h:1749

IMG::scanner
int scanner
Definition libtpcimgio.h:1737

IMG::sizey
float sizey
Definition libtpcimgio.h:1716

IMG::weight
float * weight
Definition libtpcimgio.h:1827

IMG::plane
float **** plane
Definition libtpcimgio.h:1801

IMG::start
float * start
Definition libtpcimgio.h:1815

IMG::dimz
unsigned short int dimz
Definition libtpcimgio.h:1784

IMG::modality
int modality
Definition libtpcimgio.h:1739

IMG::dimy
unsigned short int dimy
Definition libtpcimgio.h:1782

IMG::orientation
int orientation
Definition libtpcimgio.h:1694

IMG::end
float * end
Definition libtpcimgio.h:1817

IMG::calibrationFactor
float calibrationFactor
Definition libtpcimgio.h:1675

IMG::column
float ** column
Definition libtpcimgio.h:1805

IMG::zoom
float zoom
Definition libtpcimgio.h:1706

IMG::decayCorrFactor
float * decayCorrFactor
Definition libtpcimgio.h:1839

IMG::statmsg
const char * statmsg
Definition libtpcimgio.h:1667

IMG::isotopeHalflife
float isotopeHalflife
Definition libtpcimgio.h:1685

IMG::gapy
float gapy
Definition libtpcimgio.h:1722

IMG::randoms
float * randoms
Definition libtpcimgio.h:1833

IMG::gapz
float gapz
Definition libtpcimgio.h:1724

IMG::axialFOV
float axialFOV
Definition libtpcimgio.h:1708

IMG::mid
float * mid
Definition libtpcimgio.h:1819

IMG::isWeight
char isWeight
Definition libtpcimgio.h:1825

IMG::sizez
float sizez
Definition libtpcimgio.h:1718

IMG::resolutionz
float resolutionz
Definition libtpcimgio.h:1730

MATRIXLIST
Definition libtpcimgio.h:978

MATRIXLIST::matdir
MatDir * matdir
Definition libtpcimgio.h:984

MATRIXLIST::matrixNr
int matrixNr
Definition libtpcimgio.h:980

MATRIXLIST::matrixSpace
int matrixSpace
Definition libtpcimgio.h:982

MatDir
Definition libtpcimgio.h:966

MatDir::matstat
int matstat
Definition libtpcimgio.h:974

MatDir::endblk
int endblk
Definition libtpcimgio.h:972

MatDir::matnum
int matnum
Definition libtpcimgio.h:968

MatDir::strtblk
int strtblk
Definition libtpcimgio.h:970

MatDirList
Definition libtpcimgio.h:1396

MatDirList::first
MatDirNode * first
Definition libtpcimgio.h:1400

MatDirList::nmats
int nmats
Definition libtpcimgio.h:1398

MatDirList::last
MatDirNode * last
Definition libtpcimgio.h:1402

MatDirNode
Definition libtpcimgio.h:1382

MatDirNode::next
struct matdirnode * next
Definition libtpcimgio.h:1392

MatDirNode::matnum
int matnum
Definition libtpcimgio.h:1384

MatDirNode::matstat
int matstat
Definition libtpcimgio.h:1390

MatDirNode::endblk
int endblk
Definition libtpcimgio.h:1388

MatDirNode::strtblk
int strtblk
Definition libtpcimgio.h:1386

Matrix_file
Definition libtpcimgio.h:1424

Matrix_file::dirlist
MatDirList * dirlist
Definition libtpcimgio.h:1428

Matrix_file::fptr
FILE * fptr
Definition libtpcimgio.h:1430

Matrix_file::mhptr
ECAT63_mainheader * mhptr
Definition libtpcimgio.h:1426

MatrixData
Definition libtpcimgio.h:1406

MatrixData::nblks
int nblks
Definition libtpcimgio.h:1418

MatrixData::mat_type
int mat_type
Definition libtpcimgio.h:1408

MatrixData::shptr
char * shptr
Definition libtpcimgio.h:1410

MatrixData::data_ptr
char * data_ptr
Definition libtpcimgio.h:1412

MatrixData::nelements
int nelements
Definition libtpcimgio.h:1416

MatrixData::nviews
int nviews
Definition libtpcimgio.h:1414

MatrixData::data_type
int data_type
Definition libtpcimgio.h:1420

Matval
Definition libtpcimgio.h:988

Matval::bed
int bed
Definition libtpcimgio.h:998

Matval::frame
int frame
Definition libtpcimgio.h:990

Matval::gate
int gate
Definition libtpcimgio.h:994

Matval::plane
int plane
Definition libtpcimgio.h:992

Matval::data
int data
Definition libtpcimgio.h:996

NIFTI_1_HEADER
Definition libtpcimgio.h:2157

NIFTI_1_HEADER::quatern_d
float quatern_d
Definition libtpcimgio.h:2232

NIFTI_1_HEADER::quatern_c
float quatern_c
Definition libtpcimgio.h:2230

NIFTI_1_HEADER::qform_code
short int qform_code
Definition libtpcimgio.h:2224

NIFTI_1_HEADER::xyzt_units
char xyzt_units
Definition libtpcimgio.h:2204

NIFTI_1_HEADER::qoffset_x
float qoffset_x
Definition libtpcimgio.h:2234

NIFTI_1_HEADER::cal_max
float cal_max
Definition libtpcimgio.h:2206

NIFTI_1_HEADER::slice_start
short int slice_start
Definition libtpcimgio.h:2190

NIFTI_1_HEADER::slice_end
short int slice_end
Definition libtpcimgio.h:2200

NIFTI_1_HEADER::slice_duration
float slice_duration
Definition libtpcimgio.h:2210

NIFTI_1_HEADER::datatype
short int datatype
Definition libtpcimgio.h:2186

NIFTI_1_HEADER::slice_code
char slice_code
Definition libtpcimgio.h:2202

NIFTI_1_HEADER::cal_min
float cal_min
Definition libtpcimgio.h:2208

NIFTI_1_HEADER::intent_p2
float intent_p2
Definition libtpcimgio.h:2180

NIFTI_1_HEADER::intent_p1
float intent_p1
Definition libtpcimgio.h:2178

NIFTI_1_HEADER::regular
char regular
Definition libtpcimgio.h:2169

NIFTI_1_HEADER::intent_p3
float intent_p3
Definition libtpcimgio.h:2182

NIFTI_1_HEADER::glmin
int glmin
Definition libtpcimgio.h:2216

NIFTI_1_HEADER::bitpix
short int bitpix
Definition libtpcimgio.h:2188

NIFTI_1_HEADER::sizeof_hdr
int sizeof_hdr
Definition libtpcimgio.h:2159

NIFTI_1_HEADER::extents
int extents
Definition libtpcimgio.h:2165

NIFTI_1_HEADER::sform_code
short int sform_code
Definition libtpcimgio.h:2226

NIFTI_1_HEADER::vox_offset
float vox_offset
Definition libtpcimgio.h:2194

NIFTI_1_HEADER::qoffset_y
float qoffset_y
Definition libtpcimgio.h:2236

NIFTI_1_HEADER::dim_info
char dim_info
Definition libtpcimgio.h:2171

NIFTI_1_HEADER::glmax
int glmax
Definition libtpcimgio.h:2214

NIFTI_1_HEADER::scl_inter
float scl_inter
Definition libtpcimgio.h:2198

NIFTI_1_HEADER::qoffset_z
float qoffset_z
Definition libtpcimgio.h:2238

NIFTI_1_HEADER::intent_code
short int intent_code
Definition libtpcimgio.h:2184

NIFTI_1_HEADER::quatern_b
float quatern_b
Definition libtpcimgio.h:2228

NIFTI_1_HEADER::scl_slope
float scl_slope
Definition libtpcimgio.h:2196

NIFTI_1_HEADER::toffset
float toffset
Definition libtpcimgio.h:2212

NIFTI_1_HEADER::session_error
short int session_error
Definition libtpcimgio.h:2167

NIFTI_DSR
Definition libtpcimgio.h:2264

NIFTI_DSR::h
NIFTI_1_HEADER h
Definition libtpcimgio.h:2266

NIFTI_DSR::e
NIFTI_EXTENDER e
Definition libtpcimgio.h:2268

NIFTI_DSR::byte_order
int byte_order
Definition libtpcimgio.h:2270

NIFTI_EXTENDER
Definition libtpcimgio.h:2256

SIF
Definition libtpcimgio.h:1443

SIF::x1
double * x1
Definition libtpcimgio.h:1457

SIF::prompts
double * prompts
Definition libtpcimgio.h:1461

SIF::frameNr
int frameNr
Definition libtpcimgio.h:1447

SIF::x2
double * x2
Definition libtpcimgio.h:1459

SIF::version
int version
Definition libtpcimgio.h:1451

SIF::scantime
time_t scantime
Definition libtpcimgio.h:1445

SIF::weights
double * weights
Definition libtpcimgio.h:1467

SIF::colNr
int colNr
Definition libtpcimgio.h:1449

SIF::randoms
double * randoms
Definition libtpcimgio.h:1463

SIF::trues
double * trues
Definition libtpcimgio.h:1465

SVOL
Definition libtpcimgio.h:1946

SVOL::sizey
float sizey
Definition libtpcimgio.h:1956

SVOL::dimx
unsigned short int dimx
Definition libtpcimgio.h:1960

SVOL::dimz
unsigned short int dimz
Definition libtpcimgio.h:1964

SVOL::orientation
int orientation
Definition libtpcimgio.h:1952

SVOL::row
short int ** row
Definition libtpcimgio.h:1982

SVOL::sizez
float sizez
Definition libtpcimgio.h:1958

SVOL::voxel
short int * voxel
Definition libtpcimgio.h:1986

SVOL::dimy
unsigned short int dimy
Definition libtpcimgio.h:1962

SVOL::plane
short int *** plane
Definition libtpcimgio.h:1980

SVOL::scale_factor
float scale_factor
Definition libtpcimgio.h:1966

SVOL::status
char status
Definition libtpcimgio.h:1948

SVOL::statmsg
char * statmsg
Definition libtpcimgio.h:1950

SVOL::v
short int *** v
Definition libtpcimgio.h:1978

SVOL::sizex
float sizex
Definition libtpcimgio.h:1954

SVOL::column
short int * column
Definition libtpcimgio.h:1984

VOL_PIXEL
Definition libtpcimgio.h:1878

VOL_PIXEL::x
int x
Definition libtpcimgio.h:1880

VOL_PIXEL::z
int z
Definition libtpcimgio.h:1884

VOL_PIXEL::y
int y
Definition libtpcimgio.h:1882

VOL_RANGE
Definition libtpcimgio.h:1888

VOL_RANGE::x2
int x2
Definition libtpcimgio.h:1892

VOL_RANGE::z1
int z1
Definition libtpcimgio.h:1898

VOL_RANGE::y1
int y1
Definition libtpcimgio.h:1894

VOL_RANGE::y2
int y2
Definition libtpcimgio.h:1896

VOL_RANGE::z2
int z2
Definition libtpcimgio.h:1900

VOL_RANGE::x1
int x1
Definition libtpcimgio.h:1890

VOL
Definition libtpcimgio.h:1904

VOL::status
char status
Definition libtpcimgio.h:1906

VOL::column
float * column
Definition libtpcimgio.h:1940

VOL::dimx
unsigned short int dimx
Definition libtpcimgio.h:1918

VOL::dimy
unsigned short int dimy
Definition libtpcimgio.h:1920

VOL::row
float ** row
Definition libtpcimgio.h:1938

VOL::orientation
int orientation
Definition libtpcimgio.h:1910

VOL::dimz
unsigned short int dimz
Definition libtpcimgio.h:1922

VOL::sizex
float sizex
Definition libtpcimgio.h:1912

VOL::statmsg
char * statmsg
Definition libtpcimgio.h:1908

VOL::plane
float *** plane
Definition libtpcimgio.h:1936

VOL::voxel
float * voxel
Definition libtpcimgio.h:1942

VOL::v
float *** v
Definition libtpcimgio.h:1934

VOL::sizez
float sizez
Definition libtpcimgio.h:1916

VOL::sizey
float sizey
Definition libtpcimgio.h:1914

VOXEL_4D
Definition libtpcimgio.h:1645

VOXEL_4D::y
int y
Definition libtpcimgio.h:1649

VOXEL_4D::t
int t
Definition libtpcimgio.h:1653

VOXEL_4D::x
int x
Definition libtpcimgio.h:1647

VOXEL_4D::z
int z
Definition libtpcimgio.h:1651