Quantification of [11C]-TMSX PET studies
Analysis method
Logan plot
Ishiwata et al. (2003b and 2004) have validated the use of graphical analysis (Logan plot) in estimating distribution volume (DV) values for different tissues. Cerebellum was found to be unsuitable as reference region due to high nonspesific binding. Thus an arterial blood curve is always required as input.
Naganawa et al. (2007) suggest using time range 10-40 min for linear fitting in the Logan plot in the brain.
Corrections for input data
A script called TMSX_input.vbs is available for corrections of plasma data. As input it needs upto six files:
- Blood file from the online sampler (*.bld, *.alg, *.lis):,
- PET image file (*.img or *.v),
- count-rate file (*.cr, *.r, *.head or *.dft),
- manual plasma sample file (*p.kbq)
- fraction file of parent tracer in plasma (*.rat) and
- blood-to-plasma fraction file (*bp.rat); this file is optional, and population average can be used instead by giving "None" to scripts instead of the filename.
and as output, the user will receive calibrated and corrected (for decay, delay and metabolites) plasma curve and a file with metabolite TAC. In addition, the script will create post script images where the user can verify how fit of an exponential function into the fraction data succeeded, how delay correction succeeded and how the result curves look like. Dispersion correction is not applied because the effect of dispersion is minimal in case of an 11C labeled tracer.
How to use the script
Before using the script you should verify that you have proper data. For example the parent fraction data should be saved into a text file. The percentages should be within range 0.0-1.0 instead of 0-100 and outliers should be deleted. The file can look for example like this
3 0.96 10 0.96 20 0.89 30 0.97 40 0.91 60 0.76
and it should be named with extension .rat
.
Blood/plasma ratio is assumed to be constant during the study, and script can read the ratio from a given file. If study-specific blood-to-plasma ratio is not measured, then an average value 0.676 can be used; average blood-to-plasma ratio was 0.676 ±0.032 (s.d.), n=8 (unpublished results).
You can find a HTA user interface
(TMSX_input.hta)
on S:\pet-software\bin\windows\
for the script
TMSX_input.vbs
and either copy and save the .hta
file into
your own computer or double click to open it from that directory.
The names of input and output files should be filled to the form and
then the execution button can be pressed. You will receive a message
telling when the execution has ended.
Please do go through the created PostScript graphs to verify the success of
the process!
The plasma curve that you will receive from the script can then be used
as such for the graphical analysis.